Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21257

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21256 and SM_b21257 are separated by 351 nucleotidesSM_b21257 and SM_b21258 overlap by 34 nucleotidesSM_b21258 and SM_b21259 overlap by 4 nucleotides SM_b21256: SM_b21256 - nucleotide sugar oxidase, at 826,682 to 828,115 _b21256 SM_b21257: SM_b21257 - adenylate cyclase, at 828,467 to 829,486 _b21257 SM_b21258: SM_b21258 - adenylate cyclase, at 829,453 to 829,815 _b21258 SM_b21259: SM_b21259 - hypothetical protein, at 829,812 to 830,792 _b21259 Position (kb) 828 829 830Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 827.490 kb on + strand, within SM_b21256at 827.491 kb on - strand, within SM_b21256at 827.587 kb on + strand, within SM_b21256at 827.607 kb on + strand, within SM_b21256at 827.607 kb on + strand, within SM_b21256at 827.608 kb on - strand, within SM_b21256at 827.671 kb on + strand, within SM_b21256at 827.672 kb on - strand, within SM_b21256at 827.835 kb on + strand, within SM_b21256at 827.836 kb on - strand, within SM_b21256at 827.836 kb on - strand, within SM_b21256at 828.239 kb on + strandat 828.239 kb on + strandat 828.299 kb on + strandat 828.300 kb on - strandat 828.689 kb on - strand, within SM_b21257at 828.754 kb on + strand, within SM_b21257at 828.755 kb on + strand, within SM_b21257at 828.758 kb on + strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.762 kb on - strand, within SM_b21257at 828.866 kb on + strand, within SM_b21257at 828.866 kb on + strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.040 kb on - strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.081 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.192 kb on + strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.293 kb on - strand, within SM_b21257at 829.416 kb on + strandat 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.550 kb on - strand, within SM_b21258at 829.660 kb on + strand, within SM_b21258at 829.706 kb on - strand, within SM_b21258at 829.757 kb on - strand, within SM_b21258at 829.835 kb on - strandat 829.835 kb on - strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.937 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.136 kb on + strand, within SM_b21259at 830.155 kb on - strand, within SM_b21259at 830.168 kb on - strand, within SM_b21259at 830.205 kb on + strand, within SM_b21259

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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827,490 + SM_b21256 0.56 +1.1
827,491 - SM_b21256 0.56 +0.9
827,587 + SM_b21256 0.63 +2.5
827,607 + SM_b21256 0.65 +0.9
827,607 + SM_b21256 0.65 +4.5
827,608 - SM_b21256 0.65 +0.3
827,671 + SM_b21256 0.69 +1.9
827,672 - SM_b21256 0.69 +0.9
827,835 + SM_b21256 0.80 +0.8
827,836 - SM_b21256 0.80 +0.8
827,836 - SM_b21256 0.80 +0.3
828,239 + -0.4
828,239 + +0.9
828,299 + +0.0
828,300 - -0.1
828,689 - SM_b21257 0.22 -0.9
828,754 + SM_b21257 0.28 -0.6
828,755 + SM_b21257 0.28 -1.6
828,758 + SM_b21257 0.29 -0.4
828,759 - SM_b21257 0.29 -1.6
828,759 - SM_b21257 0.29 +0.9
828,759 - SM_b21257 0.29 -0.5
828,759 - SM_b21257 0.29 -0.7
828,762 - SM_b21257 0.29 +0.3
828,866 + SM_b21257 0.39 -0.3
828,866 + SM_b21257 0.39 -0.9
828,867 - SM_b21257 0.39 +1.0
828,867 - SM_b21257 0.39 -0.1
828,870 + SM_b21257 0.40 -0.4
828,870 + SM_b21257 0.40 +0.4
828,870 + SM_b21257 0.40 +0.1
828,871 - SM_b21257 0.40 +1.9
828,871 - SM_b21257 0.40 +1.1
829,039 + SM_b21257 0.56 -0.2
829,039 + SM_b21257 0.56 -2.1
829,039 + SM_b21257 0.56 +0.9
829,039 + SM_b21257 0.56 -1.3
829,040 - SM_b21257 0.56 -1.4
829,052 + SM_b21257 0.57 -0.4
829,052 + SM_b21257 0.57 +2.6
829,052 + SM_b21257 0.57 -0.3
829,052 + SM_b21257 0.57 -0.2
829,053 - SM_b21257 0.57 +0.0
829,053 - SM_b21257 0.57 -0.5
829,053 - SM_b21257 0.57 -0.6
829,053 - SM_b21257 0.57 -2.7
829,081 - SM_b21257 0.60 -0.2
829,145 - SM_b21257 0.66 +0.3
829,145 - SM_b21257 0.66 +1.4
829,190 + SM_b21257 0.71 -0.0
829,190 + SM_b21257 0.71 -0.3
829,191 - SM_b21257 0.71 +0.4
829,191 - SM_b21257 0.71 +0.4
829,191 - SM_b21257 0.71 -0.8
829,191 - SM_b21257 0.71 -0.8
829,192 + SM_b21257 0.71 -0.0
829,193 - SM_b21257 0.71 +0.1
829,193 - SM_b21257 0.71 -0.4
829,193 - SM_b21257 0.71 +0.3
829,293 - SM_b21257 0.81 +0.3
829,416 + -0.1
829,549 + SM_b21258 0.26 -0.1
829,549 + SM_b21258 0.26 +2.1
829,549 + SM_b21258 0.26 +0.1
829,550 - SM_b21258 0.27 -0.4
829,660 + SM_b21258 0.57 +1.9
829,706 - SM_b21258 0.70 -0.4
829,757 - SM_b21258 0.84 -0.6
829,835 - -0.3
829,835 - +0.9
829,875 + +0.9
829,875 + +0.5
829,875 + -4.2
829,875 + -0.5
829,876 - +2.2
829,876 - -0.5
829,876 - -1.8
829,876 - -0.6
829,876 - -0.9
829,876 - -1.8
829,937 + SM_b21259 0.13 -0.4
829,965 + SM_b21259 0.16 -0.5
829,965 + SM_b21259 0.16 -2.5
829,965 + SM_b21259 0.16 +3.2
829,965 + SM_b21259 0.16 +0.7
830,001 + SM_b21259 0.19 -0.2
830,001 + SM_b21259 0.19 -0.8
830,001 + SM_b21259 0.19 +0.4
830,002 - SM_b21259 0.19 -0.1
830,002 - SM_b21259 0.19 -0.8
830,136 + SM_b21259 0.33 -0.5
830,155 - SM_b21259 0.35 -0.6
830,168 - SM_b21259 0.36 -0.0
830,205 + SM_b21259 0.40 +2.1

Or see this region's nucleotide sequence