Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21243 and SM_b21244 are separated by 230 nucleotides SM_b21244 and SM_b21245 are separated by 489 nucleotides
SM_b21243: SM_b21243 - sulfotransferase, at 810,685 to 811,611
_b21243
SM_b21244: SM_b21244 - membrane protein, polysaccharide transporter, at 811,842 to 813,131
_b21244
SM_b21245: SM_b21245 - OMA family outer membrane protein, at 813,621 to 814,871
_b21245
Position (kb) 811
812
813
814 Strain fitness (log2 ratio) -1
0
1
2 at 811.208 kb on + strand, within SM_b21243 at 811.218 kb on - strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.311 kb on - strand, within SM_b21243 at 811.311 kb on - strand, within SM_b21243 at 811.371 kb on - strand, within SM_b21243 at 811.371 kb on - strand, within SM_b21243 at 811.391 kb on + strand, within SM_b21243 at 811.395 kb on - strand, within SM_b21243 at 811.406 kb on + strand, within SM_b21243 at 811.433 kb on - strand, within SM_b21243 at 811.433 kb on - strand, within SM_b21243 at 811.669 kb on - strand at 811.677 kb on - strand at 811.744 kb on + strand at 811.941 kb on + strand at 811.942 kb on - strand at 812.007 kb on + strand, within SM_b21244 at 812.143 kb on - strand, within SM_b21244 at 812.161 kb on + strand, within SM_b21244 at 812.162 kb on - strand, within SM_b21244 at 812.331 kb on + strand, within SM_b21244 at 812.341 kb on + strand, within SM_b21244 at 812.342 kb on - strand, within SM_b21244 at 812.372 kb on - strand, within SM_b21244 at 812.471 kb on + strand, within SM_b21244 at 812.583 kb on + strand, within SM_b21244 at 812.584 kb on - strand, within SM_b21244 at 812.584 kb on - strand, within SM_b21244 at 812.671 kb on + strand, within SM_b21244 at 812.672 kb on - strand, within SM_b21244 at 812.856 kb on - strand, within SM_b21244 at 812.968 kb on - strand, within SM_b21244 at 812.968 kb on - strand, within SM_b21244 at 812.992 kb on + strand, within SM_b21244 at 812.993 kb on - strand, within SM_b21244 at 813.003 kb on + strand at 813.004 kb on - strand at 813.004 kb on - strand at 813.212 kb on - strand at 813.212 kb on - strand at 813.219 kb on - strand at 813.226 kb on - strand at 813.241 kb on + strand at 813.241 kb on + strand at 813.271 kb on + strand at 813.311 kb on - strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.530 kb on - strand at 813.562 kb on + strand at 813.564 kb on + strand at 813.598 kb on - strand at 813.598 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.645 kb on - strand at 813.719 kb on + strand at 813.719 kb on + strand at 813.720 kb on - strand at 813.720 kb on - strand at 813.725 kb on + strand at 813.726 kb on - strand at 813.899 kb on + strand, within SM_b21245 at 813.900 kb on - strand, within SM_b21245 at 814.023 kb on + strand, within SM_b21245 at 814.023 kb on + strand, within SM_b21245 at 814.024 kb on - strand, within SM_b21245
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 811,208 + SM_b21243 0.56 +0.1 811,218 - SM_b21243 0.57 +0.1 811,310 + SM_b21243 0.67 -1.7 811,310 + SM_b21243 0.67 +0.3 811,310 + SM_b21243 0.67 +0.1 811,311 - SM_b21243 0.68 -0.3 811,311 - SM_b21243 0.68 -0.9 811,371 - SM_b21243 0.74 +0.6 811,371 - SM_b21243 0.74 -0.4 811,391 + SM_b21243 0.76 -0.5 811,395 - SM_b21243 0.77 -0.3 811,406 + SM_b21243 0.78 +0.2 811,433 - SM_b21243 0.81 -1.5 811,433 - SM_b21243 0.81 +0.9 811,669 - +0.5 811,677 - -0.8 811,744 + +0.2 811,941 + -1.1 811,942 - +1.3 812,007 + SM_b21244 0.13 +1.4 812,143 - SM_b21244 0.23 +0.4 812,161 + SM_b21244 0.25 +0.5 812,162 - SM_b21244 0.25 +0.5 812,331 + SM_b21244 0.38 +0.4 812,341 + SM_b21244 0.39 -0.1 812,342 - SM_b21244 0.39 -1.6 812,372 - SM_b21244 0.41 +0.7 812,471 + SM_b21244 0.49 -0.6 812,583 + SM_b21244 0.57 +0.9 812,584 - SM_b21244 0.58 +0.1 812,584 - SM_b21244 0.58 +0.2 812,671 + SM_b21244 0.64 +0.6 812,672 - SM_b21244 0.64 -0.5 812,856 - SM_b21244 0.79 -0.1 812,968 - SM_b21244 0.87 -0.3 812,968 - SM_b21244 0.87 +1.0 812,992 + SM_b21244 0.89 +1.0 812,993 - SM_b21244 0.89 -0.4 813,003 + -0.5 813,004 - -1.7 813,004 - +0.9 813,212 - -0.6 813,212 - -1.0 813,219 - -0.4 813,226 - -0.8 813,241 + +1.1 813,241 + +0.1 813,271 + -0.4 813,311 - +0.0 813,318 + +0.1 813,318 + -0.7 813,319 - -1.1 813,319 - -0.7 813,530 - -0.2 813,562 + +0.1 813,564 + -1.5 813,598 - -1.5 813,598 - -0.5 813,645 - +0.2 813,645 - -0.4 813,645 - -0.0 813,645 - -0.1 813,719 + +0.1 813,719 + -0.3 813,720 - -0.7 813,720 - +0.1 813,725 + +0.9 813,726 - -0.8 813,899 + SM_b21245 0.22 -0.6 813,900 - SM_b21245 0.22 +1.9 814,023 + SM_b21245 0.32 +0.8 814,023 + SM_b21245 0.32 +0.2 814,024 - SM_b21245 0.32 -0.7
Or see this region's nucleotide sequence