Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21211 and SM_b21212 are separated by 111 nucleotides SM_b21212 and SM_b21667 are separated by 70 nucleotides SM_b21667 and SM_b21213 overlap by 8 nucleotides SM_b21213 and SM_b21214 are separated by 128 nucleotides SM_b21214 and SM_b21215 are separated by 67 nucleotides
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
SM_b21212: SM_b21212 - hypothetical protein, at 965,894 to 966,274
_b21212
SM_b21667: SM_b21667 - hypothetical protein, at 966,345 to 966,524
_b21667
SM_b21213: SM_b21213 - serinethreonine protein phosphatase, at 966,517 to 967,176
_b21213
SM_b21214: SM_b21214 - 2-deoxyglucose-6-phosphate phosphatase, at 967,305 to 968,027
_b21214
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 965.630 kb on + strand at 965.630 kb on + strand at 965.631 kb on - strand at 965.631 kb on - strand at 965.791 kb on + strand at 965.836 kb on - strand at 965.876 kb on - strand at 966.014 kb on - strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.205 kb on + strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.206 kb on - strand, within SM_b21212 at 966.272 kb on + strand at 966.364 kb on - strand, within SM_b21667 at 966.372 kb on + strand, within SM_b21667 at 966.421 kb on + strand, within SM_b21667 at 966.422 kb on - strand, within SM_b21667 at 966.464 kb on + strand at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 966.998 kb on - strand, within SM_b21213 at 967.026 kb on + strand, within SM_b21213 at 967.169 kb on - strand at 967.169 kb on - strand at 967.174 kb on + strand at 967.175 kb on - strand at 967.175 kb on - strand at 967.194 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.195 kb on - strand at 967.275 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.423 kb on + strand, within SM_b21214 at 967.424 kb on - strand, within SM_b21214 at 967.483 kb on + strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.797 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 968.048 kb on + strand at 968.048 kb on + strand at 968.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 965,630 + +0.9 965,630 + -0.2 965,631 - -0.4 965,631 - +0.5 965,791 + -0.3 965,836 - -0.7 965,876 - -0.5 966,014 - SM_b21212 0.31 -1.8 966,205 + SM_b21212 0.82 +1.1 966,205 + SM_b21212 0.82 -1.2 966,206 - SM_b21212 0.82 +0.2 966,206 - SM_b21212 0.82 -0.1 966,272 + -0.4 966,364 - SM_b21667 0.11 +1.1 966,372 + SM_b21667 0.15 +1.7 966,421 + SM_b21667 0.42 -1.0 966,422 - SM_b21667 0.43 -0.3 966,464 + +1.6 966,998 - SM_b21213 0.73 -3.0 966,998 - SM_b21213 0.73 -3.0 966,998 - SM_b21213 0.73 -2.3 966,998 - SM_b21213 0.73 +1.6 966,998 - SM_b21213 0.73 -0.4 967,026 + SM_b21213 0.77 +0.3 967,169 - -0.3 967,169 - -0.2 967,174 + -0.3 967,175 - +0.5 967,175 - +1.5 967,194 + -0.9 967,194 + -0.3 967,195 - +0.3 967,195 - -0.2 967,275 - +0.2 967,303 - +0.9 967,303 - +0.9 967,303 - +0.2 967,423 + SM_b21214 0.16 +0.3 967,424 - SM_b21214 0.16 -0.2 967,483 + SM_b21214 0.25 +0.3 967,484 - SM_b21214 0.25 +0.0 967,484 - SM_b21214 0.25 +1.6 967,484 - SM_b21214 0.25 -0.2 967,731 - SM_b21214 0.59 -0.1 967,731 - SM_b21214 0.59 -1.5 967,797 + SM_b21214 0.68 +0.6 967,946 + SM_b21214 0.89 +0.9 967,946 + SM_b21214 0.89 -0.9 968,048 + -0.1 968,048 + +0.3 968,049 - -0.2
Or see this region's nucleotide sequence