Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21126 and SM_b21127 are separated by 76 nucleotides SM_b21127 and SM_b21128 are separated by 6 nucleotides SM_b21128 and SM_b21129 are separated by 135 nucleotides
SM_b21126: SM_b21126 - 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) <small>(from data)</small>, at 765,633 to 766,418
_b21126
SM_b21127: SM_b21127 - hypothetical protein, at 766,495 to 766,866
_b21127
SM_b21128: SM_b21128 - hypothetical protein, at 766,873 to 767,427
_b21128
SM_b21129: SM_b21129 - oxidoreductase, at 767,563 to 768,891
_b21129
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 766.080 kb on + strand, within SM_b21126 at 766.081 kb on - strand, within SM_b21126 at 766.233 kb on + strand, within SM_b21126 at 766.233 kb on + strand, within SM_b21126 at 766.234 kb on - strand, within SM_b21126 at 766.327 kb on + strand, within SM_b21126 at 766.864 kb on + strand at 766.864 kb on + strand at 766.865 kb on - strand at 766.865 kb on - strand at 766.974 kb on + strand, within SM_b21128 at 766.974 kb on + strand, within SM_b21128 at 766.974 kb on + strand, within SM_b21128 at 766.974 kb on + strand, within SM_b21128 at 766.974 kb on + strand, within SM_b21128 at 766.975 kb on - strand, within SM_b21128 at 766.975 kb on - strand, within SM_b21128 at 766.975 kb on - strand, within SM_b21128 at 766.975 kb on - strand, within SM_b21128 at 767.081 kb on - strand, within SM_b21128 at 767.082 kb on + strand, within SM_b21128 at 767.083 kb on - strand, within SM_b21128 at 767.083 kb on - strand, within SM_b21128 at 767.284 kb on + strand, within SM_b21128 at 767.285 kb on - strand, within SM_b21128 at 767.285 kb on - strand, within SM_b21128 at 767.285 kb on - strand, within SM_b21128 at 767.299 kb on + strand, within SM_b21128 at 767.299 kb on + strand, within SM_b21128 at 767.299 kb on + strand, within SM_b21128 at 767.300 kb on - strand, within SM_b21128 at 767.453 kb on + strand at 767.492 kb on + strand at 767.493 kb on - strand at 767.540 kb on - strand at 767.722 kb on - strand, within SM_b21129 at 767.723 kb on + strand, within SM_b21129 at 767.724 kb on - strand, within SM_b21129 at 767.724 kb on - strand, within SM_b21129 at 767.724 kb on - strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.176 kb on + strand, within SM_b21129 at 768.177 kb on - strand, within SM_b21129 at 768.177 kb on - strand, within SM_b21129 at 768.177 kb on - strand, within SM_b21129 at 768.177 kb on - strand, within SM_b21129 at 768.197 kb on + strand, within SM_b21129 at 768.198 kb on - strand, within SM_b21129 at 768.257 kb on + strand, within SM_b21129 at 768.257 kb on + strand, within SM_b21129 at 768.257 kb on + strand, within SM_b21129 at 768.258 kb on - strand, within SM_b21129 at 768.377 kb on + strand, within SM_b21129 at 768.377 kb on + strand, within SM_b21129
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 766,080 + SM_b21126 0.57 -0.2 766,081 - SM_b21126 0.57 -0.3 766,233 + SM_b21126 0.76 -1.5 766,233 + SM_b21126 0.76 +0.9 766,234 - SM_b21126 0.76 +0.5 766,327 + SM_b21126 0.88 +0.4 766,864 + -0.5 766,864 + +0.8 766,865 - -0.5 766,865 - -1.8 766,974 + SM_b21128 0.18 -0.7 766,974 + SM_b21128 0.18 -1.1 766,974 + SM_b21128 0.18 -0.7 766,974 + SM_b21128 0.18 -1.6 766,974 + SM_b21128 0.18 -0.8 766,975 - SM_b21128 0.18 -0.1 766,975 - SM_b21128 0.18 -0.8 766,975 - SM_b21128 0.18 -0.1 766,975 - SM_b21128 0.18 +2.5 767,081 - SM_b21128 0.37 +1.2 767,082 + SM_b21128 0.38 -0.3 767,083 - SM_b21128 0.38 +0.2 767,083 - SM_b21128 0.38 -1.2 767,284 + SM_b21128 0.74 +0.2 767,285 - SM_b21128 0.74 -0.2 767,285 - SM_b21128 0.74 -0.0 767,285 - SM_b21128 0.74 +0.3 767,299 + SM_b21128 0.77 -2.9 767,299 + SM_b21128 0.77 +0.3 767,299 + SM_b21128 0.77 -0.1 767,300 - SM_b21128 0.77 -0.1 767,453 + -0.8 767,492 + -0.4 767,493 - -0.1 767,540 - -1.2 767,722 - SM_b21129 0.12 +0.5 767,723 + SM_b21129 0.12 +0.3 767,724 - SM_b21129 0.12 -1.2 767,724 - SM_b21129 0.12 +1.5 767,724 - SM_b21129 0.12 -0.1 768,176 + SM_b21129 0.46 -0.1 768,176 + SM_b21129 0.46 +0.0 768,176 + SM_b21129 0.46 +0.1 768,176 + SM_b21129 0.46 +0.9 768,176 + SM_b21129 0.46 -0.5 768,176 + SM_b21129 0.46 -2.0 768,177 - SM_b21129 0.46 -0.6 768,177 - SM_b21129 0.46 -0.3 768,177 - SM_b21129 0.46 -0.2 768,177 - SM_b21129 0.46 +0.6 768,197 + SM_b21129 0.48 +0.6 768,198 - SM_b21129 0.48 -1.6 768,257 + SM_b21129 0.52 +3.0 768,257 + SM_b21129 0.52 +0.6 768,257 + SM_b21129 0.52 +1.6 768,258 - SM_b21129 0.52 +0.1 768,377 + SM_b21129 0.61 +0.4 768,377 + SM_b21129 0.61 +2.1
Or see this region's nucleotide sequence