Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20294 and SM_b20295 are separated by 28 nucleotides
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
Position (kb) 301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294 at 301.871 kb on + strand at 301.872 kb on - strand at 301.872 kb on - strand at 301.876 kb on - strand at 301.907 kb on + strand at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 300,258 + SM_b20292 0.86 -0.6 300,262 - SM_b20292 0.87 +0.3 300,374 - +0.5 300,374 - +0.8 300,394 - -0.5 300,394 - -0.3 300,440 + +0.3 300,441 - -0.6 300,528 + -0.2 300,528 + +0.7 300,529 - +0.0 300,560 + -0.0 300,560 + +0.1 300,561 - -2.0 300,586 - -0.4 300,713 + +0.4 300,714 - -0.6 300,718 + +0.8 300,752 - SM_b20293 0.14 +2.0 300,849 + SM_b20293 0.41 +1.8 301,060 + +0.1 301,061 - +0.0 301,061 - -0.2 301,273 - SM_b20294 0.11 -0.6 301,357 - SM_b20294 0.23 -1.2 301,871 + -0.9 301,872 - -0.5 301,872 - -0.3 301,876 - -1.0 301,907 + -0.3 302,022 + SM_b20295 0.10 +0.6 302,130 + SM_b20295 0.21 -1.0 302,242 + SM_b20295 0.33 -3.7 302,243 - SM_b20295 0.33 +0.6 302,451 + SM_b20295 0.54 -0.8 302,451 + SM_b20295 0.54 -0.2 302,452 - SM_b20295 0.54 -1.5 302,452 - SM_b20295 0.54 -1.7 302,452 - SM_b20295 0.54 -0.4 302,506 + SM_b20295 0.60 +0.0 302,506 + SM_b20295 0.60 -0.1 302,506 + SM_b20295 0.60 -0.2 302,507 - SM_b20295 0.60 +2.5 302,507 - SM_b20295 0.60 -1.9 302,833 + +0.0
Or see this region's nucleotide sequence