Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20272 and SM_b20273 are separated by 72 nucleotides SM_b20273 and SM_b20274 are separated by 255 nucleotides SM_b20274 and SM_b20275 are separated by 177 nucleotides
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
SM_b20273: SM_b20273 - hypothetical protein, at 278,659 to 278,844
_b20273
SM_b20274: SM_b20274 - hypothetical protein, at 279,100 to 279,285
_b20274
SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323
_b20275
Position (kb) 279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.323 kb on + strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.462 kb on - strand, within SM_b20272 at 278.479 kb on + strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.491 kb on + strand at 278.492 kb on - strand at 278.667 kb on + strand at 278.725 kb on + strand, within SM_b20273 at 278.727 kb on + strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 279.045 kb on - strand at 279.102 kb on - strand at 279.138 kb on - strand, within SM_b20274 at 279.189 kb on - strand, within SM_b20274 at 279.206 kb on - strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.227 kb on - strand, within SM_b20274 at 279.334 kb on - strand at 279.783 kb on + strand, within SM_b20275 at 279.797 kb on - strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275 at 280.037 kb on + strand, within SM_b20275 at 280.038 kb on - strand, within SM_b20275
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 278,323 + SM_b20272 0.78 +2.3 278,324 - SM_b20272 0.78 -0.3 278,324 - SM_b20272 0.78 +1.1 278,461 + SM_b20272 0.90 +0.1 278,461 + SM_b20272 0.90 +0.3 278,462 - SM_b20272 0.90 +2.0 278,479 + -0.1 278,480 - -0.8 278,480 - +0.4 278,480 - -0.2 278,491 + -0.1 278,492 - +1.1 278,667 + +1.3 278,725 + SM_b20273 0.35 -0.4 278,727 + SM_b20273 0.37 -0.4 278,728 - SM_b20273 0.37 +0.4 278,728 - SM_b20273 0.37 -1.0 279,045 - +1.5 279,102 - -0.5 279,138 - SM_b20274 0.20 +0.1 279,189 - SM_b20274 0.48 -1.9 279,206 - SM_b20274 0.57 -1.3 279,217 + SM_b20274 0.63 +0.2 279,217 + SM_b20274 0.63 +0.1 279,227 - SM_b20274 0.68 -1.9 279,334 - +0.0 279,783 + SM_b20275 0.37 -1.4 279,797 - SM_b20275 0.39 +0.1 279,800 + SM_b20275 0.39 +0.8 279,800 + SM_b20275 0.39 -0.8 279,800 + SM_b20275 0.39 +2.6 279,801 - SM_b20275 0.39 -1.0 279,801 - SM_b20275 0.39 -0.1 280,037 + SM_b20275 0.67 +1.2 280,038 - SM_b20275 0.67 -1.0
Or see this region's nucleotide sequence