Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20202 and SM_b20203 are separated by 101 nucleotides SM_b20203 and SM_b20204 are separated by 282 nucleotides SM_b20204 and SM_b20205 are separated by 41 nucleotides
SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366
_b20202
SM_b20203: SM_b20203 - transcriptional regulator, at 212,468 to 213,409
_b20203
SM_b20204: SM_b20204 - coenzyme PQQ synthesis protein PqqA, at 213,692 to 213,787
_b20204
SM_b20205: SM_b20205 - pyrroloquinoline quinone biosynthesis protein PqqB, at 213,829 to 214,740
_b20205
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.565 kb on + strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.568 kb on - strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.742 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.889 kb on - strand, within SM_b20202 at 212.010 kb on - strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.146 kb on - strand, within SM_b20202 at 212.342 kb on - strand at 213.205 kb on + strand, within SM_b20203 at 213.452 kb on + strand at 213.452 kb on + strand at 213.453 kb on - strand at 213.453 kb on - strand at 213.485 kb on + strand at 213.486 kb on - strand at 213.519 kb on - strand at 213.598 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 214.361 kb on + strand, within SM_b20205 at 214.361 kb on + strand, within SM_b20205 at 214.362 kb on - strand, within SM_b20205
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 211,565 + SM_b20202 0.24 +0.5 211,566 - SM_b20202 0.24 +0.2 211,566 - SM_b20202 0.24 -0.3 211,566 - SM_b20202 0.24 +0.2 211,568 - SM_b20202 0.24 +0.1 211,711 + SM_b20202 0.38 -0.1 211,711 + SM_b20202 0.38 +0.7 211,742 - SM_b20202 0.40 +1.4 211,799 - SM_b20202 0.46 +1.0 211,799 - SM_b20202 0.46 -0.2 211,888 + SM_b20202 0.54 -1.5 211,888 + SM_b20202 0.54 -0.1 211,889 - SM_b20202 0.54 -0.2 212,010 - SM_b20202 0.66 +0.7 212,104 + SM_b20202 0.75 -1.0 212,104 + SM_b20202 0.75 +1.4 212,146 - SM_b20202 0.79 +1.2 212,342 - -0.5 213,205 + SM_b20203 0.78 +0.2 213,452 + -0.4 213,452 + +2.3 213,453 - -1.4 213,453 - -1.3 213,485 + -3.3 213,486 - +0.8 213,519 - +1.6 213,598 - +0.7 213,692 - +0.5 213,692 - +2.0 213,692 - -0.4 213,692 - +0.1 214,361 + SM_b20205 0.58 -2.4 214,361 + SM_b20205 0.58 +1.4 214,362 - SM_b20205 0.58 -1.9
Or see this region's nucleotide sequence