Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20157 and SM_b20158 are separated by 28 nucleotides SM_b20158 and SM_b20159 are separated by 53 nucleotides
SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398
_b20157
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.470 kb on - strand, within SM_b20157 at 175.712 kb on + strand, within SM_b20157 at 175.713 kb on - strand, within SM_b20157 at 175.717 kb on + strand, within SM_b20157 at 175.750 kb on + strand, within SM_b20157 at 175.751 kb on - strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.877 kb on + strand, within SM_b20157 at 175.889 kb on + strand at 176.318 kb on + strand at 176.432 kb on + strand at 176.571 kb on + strand, within SM_b20158 at 176.571 kb on + strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.572 kb on - strand, within SM_b20158 at 176.623 kb on - strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.865 kb on + strand, within SM_b20158 at 176.880 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.973 kb on + strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.975 kb on + strand, within SM_b20158 at 177.231 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.348 kb on - strand, within SM_b20158 at 177.752 kb on + strand, within SM_b20159 at 177.753 kb on - strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.778 kb on - strand, within SM_b20159 at 177.820 kb on + strand, within SM_b20159 at 177.821 kb on - strand, within SM_b20159 at 178.002 kb on - strand, within SM_b20159 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 175,470 - SM_b20157 0.17 -0.2 175,712 + SM_b20157 0.39 +0.2 175,713 - SM_b20157 0.39 +1.1 175,717 + SM_b20157 0.39 +0.3 175,750 + SM_b20157 0.42 +1.1 175,751 - SM_b20157 0.42 -0.4 175,820 + SM_b20157 0.49 +1.2 175,820 + SM_b20157 0.49 -0.8 175,820 + SM_b20157 0.49 -0.5 175,820 + SM_b20157 0.49 -0.5 175,821 - SM_b20157 0.49 -0.6 175,821 - SM_b20157 0.49 -1.3 175,877 + SM_b20157 0.54 -0.3 175,889 + +2.0 176,318 + -1.2 176,432 + +0.0 176,571 + SM_b20158 0.13 +0.4 176,571 + SM_b20158 0.13 -1.1 176,572 - SM_b20158 0.13 +2.5 176,572 - SM_b20158 0.13 -0.6 176,572 - SM_b20158 0.13 -0.8 176,623 - SM_b20158 0.17 -1.2 176,781 + SM_b20158 0.31 -1.3 176,781 + SM_b20158 0.31 -0.5 176,781 + SM_b20158 0.31 +0.4 176,782 - SM_b20158 0.32 -0.3 176,782 - SM_b20158 0.32 +0.5 176,782 - SM_b20158 0.32 +0.3 176,865 + SM_b20158 0.39 +0.1 176,880 + SM_b20158 0.40 -0.3 176,905 + SM_b20158 0.42 -0.4 176,905 + SM_b20158 0.42 -0.0 176,905 + SM_b20158 0.42 -0.4 176,973 + SM_b20158 0.49 +0.0 176,974 - SM_b20158 0.49 +0.2 176,974 - SM_b20158 0.49 -0.8 176,975 + SM_b20158 0.49 -0.4 177,231 + SM_b20158 0.71 +0.2 177,279 + SM_b20158 0.76 -0.2 177,279 + SM_b20158 0.76 -0.2 177,280 - SM_b20158 0.76 +1.2 177,280 - SM_b20158 0.76 -0.3 177,280 - SM_b20158 0.76 -1.7 177,280 - SM_b20158 0.76 -0.4 177,345 + SM_b20158 0.82 -0.4 177,345 + SM_b20158 0.82 +0.1 177,345 + SM_b20158 0.82 -0.5 177,346 - SM_b20158 0.82 +0.1 177,346 - SM_b20158 0.82 -0.5 177,348 - SM_b20158 0.82 -1.1 177,752 + SM_b20159 0.17 -0.3 177,753 - SM_b20159 0.17 +0.3 177,777 + SM_b20159 0.19 -0.5 177,777 + SM_b20159 0.19 -1.8 177,778 - SM_b20159 0.20 -1.1 177,820 + SM_b20159 0.24 +0.1 177,821 - SM_b20159 0.24 -0.9 178,002 - SM_b20159 0.45 +0.9 178,338 - SM_b20159 0.83 -0.6 178,397 + SM_b20159 0.89 +0.2
Or see this region's nucleotide sequence