Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20141 and SM_b20142 overlap by 8 nucleotides SM_b20142 and SM_b20143 are separated by 14 nucleotides SM_b20143 and SM_b20144 are separated by 85 nucleotides
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891
_b20144
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.923 kb on - strand, within SM_b20142 at 157.243 kb on + strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.417 kb on + strand at 157.417 kb on + strand at 157.551 kb on - strand, within SM_b20143 at 158.232 kb on + strand at 158.232 kb on + strand at 158.233 kb on - strand at 158.522 kb on + strand at 158.522 kb on + strand at 158.639 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.736 kb on - strand, within SM_b20144 at 158.738 kb on + strand, within SM_b20144 at 158.739 kb on - strand, within SM_b20144 at 158.879 kb on - strand, within SM_b20144 at 158.936 kb on + strand, within SM_b20144 at 159.096 kb on + strand, within SM_b20144 at 159.116 kb on + strand, within SM_b20144 at 159.117 kb on - strand, within SM_b20144 at 159.138 kb on - strand, within SM_b20144
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 156,599 + SM_b20142 0.16 +0.8 156,599 + SM_b20142 0.16 -0.5 156,599 + SM_b20142 0.16 +0.5 156,695 + SM_b20142 0.27 -0.8 156,695 + SM_b20142 0.27 -3.6 156,917 + SM_b20142 0.51 -0.8 156,917 + SM_b20142 0.51 -0.1 156,922 + SM_b20142 0.51 -0.5 156,922 + SM_b20142 0.51 +0.0 156,922 + SM_b20142 0.51 +0.7 156,923 - SM_b20142 0.51 -0.4 157,243 + SM_b20142 0.86 -0.7 157,244 - SM_b20142 0.86 +0.6 157,244 - SM_b20142 0.86 +0.4 157,244 - SM_b20142 0.86 -1.5 157,417 + -0.7 157,417 + -2.4 157,551 - SM_b20143 0.18 -2.9 158,232 + -2.0 158,232 + +0.2 158,233 - -2.6 158,522 + +1.1 158,522 + -0.9 158,639 + SM_b20144 0.17 +0.1 158,735 + SM_b20144 0.23 +0.2 158,735 + SM_b20144 0.23 -0.7 158,736 - SM_b20144 0.23 -0.0 158,738 + SM_b20144 0.23 -1.0 158,739 - SM_b20144 0.23 -0.5 158,879 - SM_b20144 0.33 -1.9 158,936 + SM_b20144 0.37 -1.3 159,096 + SM_b20144 0.47 +0.9 159,116 + SM_b20144 0.48 +1.1 159,117 - SM_b20144 0.49 -0.1 159,138 - SM_b20144 0.50 +0.9
Or see this region's nucleotide sequence