Strain Fitness in Sinorhizobium meliloti 1021 around SMc03853

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03851 and SMc03852 are separated by 158 nucleotidesSMc03852 and SMc03853 overlap by 4 nucleotidesSMc03853 and SMc03854 are separated by 97 nucleotides SMc03851: SMc03851 - thiol:disulfide interchange protein (cytochrome C biogenesis protein), at 3,516,142 to 3,516,750 SMc03851 SMc03852: SMc03852 - hypothetical protein, at 3,516,909 to 3,517,502 SMc03852 SMc03853: SMc03853 - intracellular septation protein A, at 3,517,499 to 3,518,131 SMc03853 SMc03854: SMc03854 - cell division protein, at 3,518,229 to 3,519,875 SMc03854 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -2 -1 0 1 2at 3516.511 kb on + strand, within SMc03851at 3516.748 kb on + strandat 3516.994 kb on + strand, within SMc03852at 3517.089 kb on - strand, within SMc03852at 3517.151 kb on - strand, within SMc03852at 3517.162 kb on - strand, within SMc03852at 3517.200 kb on + strand, within SMc03852at 3517.267 kb on + strand, within SMc03852at 3517.303 kb on + strand, within SMc03852at 3517.304 kb on - strand, within SMc03852at 3517.328 kb on + strand, within SMc03852at 3517.329 kb on - strand, within SMc03852at 3517.366 kb on + strand, within SMc03852at 3517.387 kb on - strand, within SMc03852at 3518.191 kb on + strandat 3518.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,516,511 + SMc03851 0.61 -0.8
3,516,748 + +1.4
3,516,994 + SMc03852 0.14 +0.7
3,517,089 - SMc03852 0.30 +2.6
3,517,151 - SMc03852 0.41 -0.6
3,517,162 - SMc03852 0.43 +1.5
3,517,200 + SMc03852 0.49 -0.8
3,517,267 + SMc03852 0.60 -1.8
3,517,303 + SMc03852 0.66 -0.6
3,517,304 - SMc03852 0.66 +0.1
3,517,328 + SMc03852 0.71 -0.6
3,517,329 - SMc03852 0.71 +0.0
3,517,366 + SMc03852 0.77 -1.3
3,517,387 - SMc03852 0.80 +0.3
3,518,191 + -1.6
3,518,191 + +1.0

Or see this region's nucleotide sequence