Strain Fitness in Sinorhizobium meliloti 1021 around SMc03791

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03790 and SMc03791 are separated by 169 nucleotidesSMc03791 and SMc03792 are separated by 84 nucleotidesSMc03792 and SMc03793 overlap by 4 nucleotides SMc03789: SMc03789 - hypothetical protein, at 3,455,857 to 3,457,470 SMc03789 SMc03790: SMc03790 - hypothetical protein, at 3,457,313 to 3,458,266 SMc03790 SMc03791: SMc03791 - hypothetical protein, at 3,458,436 to 3,458,870 SMc03791 SMc03792: SMc03792 - hypothetical protein, at 3,458,955 to 3,459,161 SMc03792 SMc03793: SMc03793 - citrate lyase subunit beta, at 3,459,158 to 3,460,060 SMc03793 Position (kb) 3458 3459Strain fitness (log2 ratio) -2 -1 0 1at 3457.455 kb on + strandat 3457.863 kb on + strand, within SMc03790at 3457.864 kb on - strand, within SMc03790at 3457.885 kb on - strandat 3457.971 kb on + strand, within SMc03790at 3457.971 kb on + strand, within SMc03790at 3457.971 kb on + strand, within SMc03790at 3458.410 kb on + strandat 3458.412 kb on + strandat 3458.413 kb on - strandat 3458.413 kb on - strandat 3458.413 kb on - strandat 3458.495 kb on - strand, within SMc03791at 3458.520 kb on + strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.769 kb on - strand, within SMc03791at 3458.769 kb on - strand, within SMc03791at 3458.986 kb on + strand, within SMc03792at 3458.987 kb on - strand, within SMc03792at 3459.058 kb on + strand, within SMc03792at 3459.059 kb on - strand, within SMc03792at 3459.532 kb on - strand, within SMc03793at 3459.532 kb on - strand, within SMc03793at 3459.532 kb on - strand, within SMc03793at 3459.740 kb on - strand, within SMc03793

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,457,455 + -0.8
3,457,863 + SMc03790 0.58 +0.2
3,457,864 - SMc03790 0.58 -0.8
3,457,885 - +1.0
3,457,971 + SMc03790 0.69 +0.3
3,457,971 + SMc03790 0.69 +0.4
3,457,971 + SMc03790 0.69 +0.4
3,458,410 + -1.1
3,458,412 + +0.0
3,458,413 - -0.5
3,458,413 - -0.3
3,458,413 - -0.8
3,458,495 - SMc03791 0.14 +0.2
3,458,520 + SMc03791 0.19 -1.1
3,458,521 - SMc03791 0.20 -2.4
3,458,521 - SMc03791 0.20 -1.9
3,458,521 - SMc03791 0.20 -2.5
3,458,521 - SMc03791 0.20 -0.6
3,458,769 - SMc03791 0.77 -2.0
3,458,769 - SMc03791 0.77 -0.9
3,458,986 + SMc03792 0.15 +0.3
3,458,987 - SMc03792 0.15 -0.6
3,459,058 + SMc03792 0.50 +0.8
3,459,059 - SMc03792 0.50 -0.3
3,459,532 - SMc03793 0.41 -0.6
3,459,532 - SMc03793 0.41 -0.9
3,459,532 - SMc03793 0.41 -1.3
3,459,740 - SMc03793 0.64 +0.0

Or see this region's nucleotide sequence