Strain Fitness in Sinorhizobium meliloti 1021 around SMc03104

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03105 and SMc03104 are separated by 168 nucleotidesSMc03104 and SMc03103 are separated by 345 nucleotides SMc03105: SMc03105 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,235,946 to 3,237,121 SMc03105 SMc03104: SMc03104 - 5-aminolevulinate synthase, at 3,237,290 to 3,238,507 SMc03104 SMc03103: SMc03103 - carbon monoxide dehydrogenase medium subunit transmembrane protein, at 3,238,853 to 3,239,650 SMc03103 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -2 -1 0 1at 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.128 kb on - strandat 3237.128 kb on - strandat 3237.128 kb on - strandat 3237.222 kb on + strandat 3237.291 kb on + strandat 3238.697 kb on + strandat 3238.698 kb on - strandat 3238.925 kb on - strandat 3239.103 kb on + strand, within SMc03103at 3239.134 kb on - strand, within SMc03103at 3239.330 kb on - strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.358 kb on - strand, within SMc03103at 3239.358 kb on - strand, within SMc03103

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,237,127 + -1.2
3,237,127 + -0.4
3,237,127 + +0.8
3,237,127 + -1.4
3,237,128 - +1.2
3,237,128 - -0.8
3,237,128 - -0.3
3,237,222 + -1.0
3,237,291 + -0.3
3,238,697 + -1.1
3,238,698 - +0.2
3,238,925 - +0.1
3,239,103 + SMc03103 0.31 +0.1
3,239,134 - SMc03103 0.35 -1.6
3,239,330 - SMc03103 0.60 -1.0
3,239,357 + SMc03103 0.63 -0.2
3,239,357 + SMc03103 0.63 -0.6
3,239,358 - SMc03103 0.63 -1.9
3,239,358 - SMc03103 0.63 -0.6

Or see this region's nucleotide sequence