Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03004 and SMc03005 are separated by 25 nucleotides SMc03005 and SMc03006 are separated by 3 nucleotides SMc03006 and SMc03007 are separated by 20 nucleotides SMc03007 and SMc03008 are separated by 5 nucleotides SMc03008 and SMc03009 overlap by 4 nucleotides
SMc03004: SMc03004 - chemoreceptor (methyl-accepting chemotaxis protein), at 702,172 to 703,773
SMc03004
SMc03005: SMc03005 - hypothetical protein, at 703,799 to 704,092
SMc03005
SMc03006: SMc03006 - chemotaxis regulator protein, at 704,096 to 704,461
SMc03006
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
Position (kb) 704
705
706
707 Strain fitness (log2 ratio) -1
0
1
2
3 at 703.694 kb on + strand at 703.695 kb on - strand at 703.775 kb on + strand at 703.776 kb on - strand at 703.776 kb on - strand at 704.225 kb on - strand, within SMc03006 at 704.488 kb on - strand at 704.488 kb on - strand at 705.019 kb on + strand, within SMc03007 at 705.019 kb on + strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.126 kb on + strand, within SMc03007 at 705.172 kb on + strand, within SMc03007 at 705.173 kb on - strand, within SMc03007 at 705.173 kb on - strand, within SMc03007 at 705.684 kb on + strand, within SMc03007 at 705.684 kb on + strand, within SMc03007 at 705.849 kb on + strand, within SMc03007 at 705.850 kb on - strand, within SMc03007 at 706.596 kb on - strand at 706.596 kb on - strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.619 kb on - strand at 706.619 kb on - strand at 706.689 kb on - strand at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 703,694 + -1.6 703,695 - -1.3 703,775 + +1.1 703,776 - -0.5 703,776 - -1.0 704,225 - SMc03006 0.35 -0.9 704,488 - -0.6 704,488 - +0.6 705,019 + SMc03007 0.24 +1.1 705,019 + SMc03007 0.24 +1.3 705,020 - SMc03007 0.24 +1.6 705,020 - SMc03007 0.24 +0.5 705,053 - SMc03007 0.25 +2.7 705,053 - SMc03007 0.25 +0.7 705,126 + SMc03007 0.28 +0.2 705,172 + SMc03007 0.30 +1.4 705,173 - SMc03007 0.30 -0.2 705,173 - SMc03007 0.30 -1.2 705,684 + SMc03007 0.53 -0.8 705,684 + SMc03007 0.53 -0.0 705,849 + SMc03007 0.60 -1.1 705,850 - SMc03007 0.60 -0.2 706,596 - -0.3 706,596 - -0.8 706,618 + +0.1 706,618 + +1.0 706,618 + -0.6 706,618 + -0.9 706,618 + +0.2 706,619 - +0.5 706,619 - -0.7 706,689 - +0.0 707,161 + SMc03008 0.85 -0.6 707,185 + -0.6 707,336 + SMc03009 0.12 +3.0 707,336 + SMc03009 0.12 -1.0 707,336 + SMc03009 0.12 -0.5 707,355 - SMc03009 0.14 -1.6 707,355 - SMc03009 0.14 -1.6 707,385 - SMc03009 0.17 +0.6 707,575 + SMc03009 0.38 +0.4 707,693 + SMc03009 0.51 +0.1
Or see this region's nucleotide sequence