Strain Fitness in Sinorhizobium meliloti 1021 around SMc02675

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02454 and SMc02539 are separated by 139 nucleotidesSMc02539 and SMc02675 are separated by 256 nucleotidesSMc02675 and SMc02432 are separated by 682 nucleotides SMc02454: SMc02454 - tRNA-Ala, at 2,809,456 to 2,809,531 SMc02454 SMc02539: SMc02539 - tRNA-Ile, at 2,809,671 to 2,809,747 SMc02539 SMc02675: SMc02675 - ribosomal RNA-16S, at 2,810,004 to 2,811,487 SMc02675 SMc02432: SMc02432 - hypothetical protein, at 2,812,170 to 2,814,110 SMc02432 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -1 0 1at 2811.851 kb on + strandat 2811.853 kb on + strandat 2811.980 kb on + strandat 2811.980 kb on + strandat 2811.981 kb on - strandat 2812.094 kb on + strandat 2812.137 kb on + strandat 2812.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,811,851 + -0.2
2,811,853 + +0.3
2,811,980 + +0.1
2,811,980 + -1.3
2,811,981 - -1.5
2,812,094 + -1.6
2,812,137 + -0.1
2,812,137 + -1.0

Or see this region's nucleotide sequence