Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01167 and SMc01151 are separated by 123 nucleotides SMc01151 and SMc01150 overlap by 4 nucleotides
SMc01167: SMc01167 - chromosomal replication initiation protein, at 399,330 to 400,853
SMc01167
SMc01151: SMc01151 - hypothetical protein, at 400,977 to 401,351
SMc01151
SMc01150: SMc01150 - hypothetical protein, at 401,348 to 402,619
SMc01150
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 400.851 kb on + strand at 400.873 kb on + strand at 400.873 kb on + strand at 400.939 kb on + strand at 400.983 kb on + strand at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.221 kb on - strand, within SMc01151 at 401.326 kb on - strand at 401.326 kb on - strand at 401.420 kb on + strand at 401.467 kb on + strand at 401.752 kb on - strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.942 kb on + strand, within SMc01150 at 402.228 kb on + strand, within SMc01150 at 402.306 kb on - strand, within SMc01150
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 400,851 + +0.8 400,873 + -0.2 400,873 + +1.4 400,939 + +3.6 400,983 + +0.0 401,082 + SMc01151 0.28 +0.5 401,082 + SMc01151 0.28 -0.3 401,082 + SMc01151 0.28 -1.1 401,083 - SMc01151 0.28 -2.1 401,083 - SMc01151 0.28 -1.9 401,083 - SMc01151 0.28 -0.2 401,220 + SMc01151 0.65 -1.6 401,220 + SMc01151 0.65 +0.6 401,221 - SMc01151 0.65 -2.2 401,326 - -0.6 401,326 - -0.9 401,420 + +0.4 401,467 + +0.7 401,752 - SMc01150 0.32 -1.0 401,921 + SMc01150 0.45 +0.5 401,921 + SMc01150 0.45 +0.1 401,921 + SMc01150 0.45 -1.0 401,921 + SMc01150 0.45 +0.0 401,921 + SMc01150 0.45 -0.2 401,921 + SMc01150 0.45 -0.2 401,921 + SMc01150 0.45 +0.5 401,922 - SMc01150 0.45 -1.3 401,922 - SMc01150 0.45 +0.7 401,922 - SMc01150 0.45 +0.4 401,922 - SMc01150 0.45 -0.3 401,942 + SMc01150 0.47 -0.2 402,228 + SMc01150 0.69 -1.1 402,306 - SMc01150 0.75 +1.0
Or see this region's nucleotide sequence