Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00827 and SMc00828 are separated by 142 nucleotides SMc00828 and SMc00829 are separated by 276 nucleotides
SMc00827: SMc00827 - transport transmembrane protein, at 847,602 to 849,146
SMc00827
SMc00828: SMc00828 - hypothetical protein, at 849,289 to 849,795
SMc00828
SMc00829: SMc00829 - transcriptional regulator, at 850,072 to 850,899
SMc00829
Position (kb) 849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 848.359 kb on + strand, within SMc00827 at 848.359 kb on + strand, within SMc00827 at 848.360 kb on - strand, within SMc00827 at 848.360 kb on - strand, within SMc00827 at 848.437 kb on + strand, within SMc00827 at 848.437 kb on + strand, within SMc00827 at 848.438 kb on - strand, within SMc00827 at 848.438 kb on - strand, within SMc00827 at 848.582 kb on + strand, within SMc00827 at 848.630 kb on - strand, within SMc00827 at 848.891 kb on - strand, within SMc00827 at 848.947 kb on + strand, within SMc00827 at 848.947 kb on + strand, within SMc00827 at 848.973 kb on + strand, within SMc00827 at 849.125 kb on + strand at 849.125 kb on + strand at 849.125 kb on + strand at 849.125 kb on + strand at 849.125 kb on + strand at 849.126 kb on - strand at 849.127 kb on - strand at 849.128 kb on + strand at 849.128 kb on + strand at 849.354 kb on + strand, within SMc00828 at 849.524 kb on + strand, within SMc00828 at 849.530 kb on + strand, within SMc00828 at 849.531 kb on - strand, within SMc00828 at 849.581 kb on + strand, within SMc00828 at 849.581 kb on + strand, within SMc00828 at 849.582 kb on - strand, within SMc00828 at 849.582 kb on - strand, within SMc00828 at 849.582 kb on - strand, within SMc00828 at 849.736 kb on - strand, within SMc00828 at 849.846 kb on + strand at 849.869 kb on - strand at 849.931 kb on + strand at 849.931 kb on + strand at 849.931 kb on + strand at 849.932 kb on - strand at 849.932 kb on - strand at 849.932 kb on - strand at 849.932 kb on - strand at 849.933 kb on + strand at 849.933 kb on + strand at 849.933 kb on + strand at 849.944 kb on + strand at 849.997 kb on + strand at 849.997 kb on + strand at 849.997 kb on + strand at 849.997 kb on + strand at 849.998 kb on - strand at 849.998 kb on - strand at 849.998 kb on - strand at 849.998 kb on - strand at 850.001 kb on + strand at 850.002 kb on - strand at 850.002 kb on - strand at 850.044 kb on + strand at 850.045 kb on - strand at 850.229 kb on + strand, within SMc00829 at 850.229 kb on + strand, within SMc00829 at 850.230 kb on - strand, within SMc00829 at 850.357 kb on - strand, within SMc00829 at 850.392 kb on - strand, within SMc00829 at 850.547 kb on + strand, within SMc00829 at 850.548 kb on - strand, within SMc00829 at 850.548 kb on - strand, within SMc00829
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 848,359 + SMc00827 0.49 -2.5 848,359 + SMc00827 0.49 -0.9 848,360 - SMc00827 0.49 -1.4 848,360 - SMc00827 0.49 -3.3 848,437 + SMc00827 0.54 -1.2 848,437 + SMc00827 0.54 +0.9 848,438 - SMc00827 0.54 -1.2 848,438 - SMc00827 0.54 -1.7 848,582 + SMc00827 0.63 -0.4 848,630 - SMc00827 0.67 -3.7 848,891 - SMc00827 0.83 -1.1 848,947 + SMc00827 0.87 -2.8 848,947 + SMc00827 0.87 +1.7 848,973 + SMc00827 0.89 -2.9 849,125 + -0.7 849,125 + -0.6 849,125 + -1.9 849,125 + -0.9 849,125 + -3.7 849,126 - +1.4 849,127 - -0.0 849,128 + -1.5 849,128 + -1.8 849,354 + SMc00828 0.13 -1.4 849,524 + SMc00828 0.46 -1.2 849,530 + SMc00828 0.48 -1.7 849,531 - SMc00828 0.48 -0.5 849,581 + SMc00828 0.58 -2.3 849,581 + SMc00828 0.58 -0.7 849,582 - SMc00828 0.58 -2.6 849,582 - SMc00828 0.58 -1.3 849,582 - SMc00828 0.58 -1.1 849,736 - SMc00828 0.88 -2.2 849,846 + -0.4 849,869 - -0.9 849,931 + -1.7 849,931 + +0.1 849,931 + -0.7 849,932 - -2.6 849,932 - +0.2 849,932 - -0.2 849,932 - -0.4 849,933 + -1.1 849,933 + -0.5 849,933 + -0.9 849,944 + -1.4 849,997 + -0.4 849,997 + -3.3 849,997 + -0.1 849,997 + +1.9 849,998 - -0.4 849,998 - +0.2 849,998 - -0.4 849,998 - -0.2 850,001 + +0.0 850,002 - +1.1 850,002 - +1.0 850,044 + +0.1 850,045 - +0.1 850,229 + SMc00829 0.19 +1.4 850,229 + SMc00829 0.19 +0.3 850,230 - SMc00829 0.19 +1.7 850,357 - SMc00829 0.34 -0.8 850,392 - SMc00829 0.39 +0.3 850,547 + SMc00829 0.57 +0.2 850,548 - SMc00829 0.57 -0.3 850,548 - SMc00829 0.57 -0.1
Or see this region's nucleotide sequence