Strain Fitness in Sinorhizobium meliloti 1021 around SMc00810

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00842 and SMc00810 are separated by 589 nucleotidesSMc00810 and SMc00811 overlap by 4 nucleotidesSMc00811 and SMc00812 are separated by 4 nucleotides SMc00842: SMc00842 - tRNA-Gln, at 830,173 to 830,246 SMc00842 SMc00810: SMc00810 - hypothetical protein, at 830,836 to 832,176 SMc00810 SMc00811: SMc00811 - cell division protein, at 832,173 to 832,910 SMc00811 SMc00812: SMc00812 - hypothetical protein, at 832,915 to 833,298 SMc00812 Position (kb) 830 831 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 829.916 kb on - strandat 830.007 kb on + strandat 830.007 kb on + strandat 830.007 kb on + strandat 830.067 kb on + strandat 830.068 kb on - strandat 830.095 kb on + strandat 830.096 kb on - strandat 830.125 kb on - strandat 830.128 kb on + strandat 830.145 kb on - strandat 830.148 kb on + strandat 830.471 kb on + strandat 832.908 kb on + strandat 832.908 kb on + strandat 832.908 kb on + strandat 832.922 kb on + strandat 832.922 kb on + strandat 832.922 kb on + strandat 832.923 kb on - strandat 832.923 kb on - strandat 832.923 kb on - strandat 832.923 kb on - strandat 832.923 kb on - strandat 832.923 kb on - strandat 832.924 kb on + strandat 832.924 kb on + strandat 832.925 kb on - strandat 832.925 kb on - strandat 832.925 kb on - strandat 832.925 kb on - strandat 832.970 kb on - strand, within SMc00812

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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829,916 - -0.9
830,007 + +0.7
830,007 + -0.2
830,007 + -0.8
830,067 + -1.4
830,068 - -0.7
830,095 + -0.1
830,096 - +0.2
830,125 - +0.2
830,128 + -0.7
830,145 - +1.1
830,148 + +0.3
830,471 + +0.0
832,908 + -0.2
832,908 + +0.3
832,908 + -1.0
832,922 + +1.2
832,922 + +0.3
832,922 + +0.1
832,923 - -0.7
832,923 - -1.0
832,923 - +0.0
832,923 - -0.2
832,923 - -0.7
832,923 - +0.3
832,924 + +2.6
832,924 + -0.4
832,925 - -3.0
832,925 - +0.2
832,925 - +0.8
832,925 - -2.5
832,970 - SMc00812 0.14 -0.3

Or see this region's nucleotide sequence