Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00384 and SMc00385 are separated by 291 nucleotides SMc00385 and SMc00386 are separated by 3 nucleotides SMc00386 and SMc00387 are separated by 208 nucleotides
SMc00384: SMc00384 - transcriptional regulation protein, at 337,736 to 338,245
SMc00384
SMc00385: SMc00385 - hypothetical protein, at 338,537 to 339,010
SMc00385
SMc00386: SMc00386 - hypothetical protein, at 339,014 to 339,364
SMc00386
SMc00387: SMc00387 - aromatic amino acid aminotransferase, at 339,573 to 340,742
SMc00387
Position (kb) 339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.529 kb on + strand at 338.718 kb on + strand, within SMc00385 at 338.937 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 339.015 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.016 kb on - strand at 339.037 kb on - strand at 339.173 kb on - strand, within SMc00386 at 339.267 kb on + strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.283 kb on - strand, within SMc00386 at 339.355 kb on + strand at 339.355 kb on + strand at 339.401 kb on + strand at 339.551 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.687 kb on - strand at 339.687 kb on - strand at 339.907 kb on + strand, within SMc00387 at 340.114 kb on + strand, within SMc00387 at 340.275 kb on - strand, within SMc00387 at 340.315 kb on + strand, within SMc00387
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 338,018 + SMc00384 0.55 +0.4 338,018 + SMc00384 0.55 -1.5 338,018 + SMc00384 0.55 +0.5 338,156 + SMc00384 0.82 +0.4 338,156 + SMc00384 0.82 -1.7 338,156 + SMc00384 0.82 -0.6 338,156 + SMc00384 0.82 +2.3 338,251 - -0.4 338,251 - -0.2 338,251 - -0.3 338,251 - -0.2 338,268 - +0.4 338,268 - -0.5 338,268 - -0.7 338,503 + -2.2 338,503 + -1.3 338,503 + +0.1 338,503 + +3.0 338,503 + -0.6 338,503 + -1.0 338,529 + -1.1 338,718 + SMc00385 0.38 -0.9 338,937 + SMc00385 0.84 -1.5 338,943 + SMc00385 0.86 +1.9 338,943 + SMc00385 0.86 +0.7 338,943 + SMc00385 0.86 +0.4 338,943 + SMc00385 0.86 -1.4 338,943 + SMc00385 0.86 -0.1 338,943 + SMc00385 0.86 +0.0 338,944 - SMc00385 0.86 +0.1 338,944 - SMc00385 0.86 -0.2 338,944 - SMc00385 0.86 +0.7 338,944 - SMc00385 0.86 -1.5 339,015 + +0.1 339,015 + +0.0 339,016 - +0.1 339,016 - -1.0 339,037 - -1.9 339,173 - SMc00386 0.45 +0.8 339,267 + SMc00386 0.72 -0.4 339,268 - SMc00386 0.72 +1.4 339,268 - SMc00386 0.72 +3.3 339,268 - SMc00386 0.72 -0.9 339,268 - SMc00386 0.72 +2.3 339,283 - SMc00386 0.77 -0.5 339,355 + +0.2 339,355 + -0.2 339,401 + +1.0 339,551 + -0.4 339,656 + +0.5 339,656 + -0.2 339,656 + +0.3 339,658 + +0.1 339,658 + +0.1 339,658 + +1.4 339,658 + -1.5 339,658 + +1.0 339,659 - +0.8 339,659 - -0.5 339,659 - -0.2 339,659 - +2.4 339,659 - -0.3 339,659 - -0.3 339,659 - -0.0 339,659 - -0.9 339,659 - +1.2 339,687 - -1.0 339,687 - -1.6 339,907 + SMc00387 0.29 +0.1 340,114 + SMc00387 0.46 -0.1 340,275 - SMc00387 0.60 +0.2 340,315 + SMc00387 0.63 +0.0
Or see this region's nucleotide sequence