Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1688 and SMa1691 are separated by 542 nucleotides SMa1691 and SMa5033 are separated by 776 nucleotides
SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985
SMa1688
SMa1691: SMa1691 - Cation transport ATPase, at 952,528 to 953,982
SMa1691
SMa5033: SMa5033 - hypothetical protein, at 954,759 to 955,475
SMa5033
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.543 kb on + strand at 951.621 kb on + strand, within SMa1688 at 951.622 kb on - strand, within SMa1688 at 951.742 kb on - strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 952.094 kb on + strand at 952.095 kb on - strand at 952.136 kb on - strand at 952.406 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.425 kb on + strand at 952.524 kb on + strand at 952.582 kb on + strand at 952.582 kb on + strand at 952.582 kb on + strand at 952.624 kb on + strand at 952.624 kb on + strand at 952.625 kb on - strand at 953.092 kb on + strand, within SMa1691 at 953.092 kb on + strand, within SMa1691 at 953.362 kb on + strand, within SMa1691 at 953.498 kb on - strand, within SMa1691 at 953.583 kb on - strand, within SMa1691 at 953.590 kb on + strand, within SMa1691 at 953.590 kb on + strand, within SMa1691 at 953.591 kb on - strand, within SMa1691 at 953.645 kb on - strand, within SMa1691 at 953.727 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.731 kb on + strand, within SMa1691 at 953.732 kb on - strand, within SMa1691 at 953.732 kb on - strand, within SMa1691 at 953.733 kb on + strand, within SMa1691 at 953.812 kb on - strand, within SMa1691 at 953.812 kb on - strand, within SMa1691 at 953.897 kb on - strand at 953.897 kb on - strand at 953.903 kb on + strand at 953.989 kb on - strand at 954.023 kb on + strand at 954.023 kb on + strand at 954.023 kb on + strand at 954.084 kb on - strand at 954.166 kb on + strand at 954.166 kb on + strand at 954.166 kb on + strand at 954.167 kb on - strand at 954.167 kb on - strand at 954.239 kb on + strand at 954.240 kb on - strand at 954.330 kb on + strand at 954.331 kb on - strand at 954.338 kb on - strand at 954.390 kb on + strand at 954.391 kb on - strand at 954.415 kb on - strand at 954.415 kb on - strand at 954.507 kb on - strand at 954.783 kb on - strand at 954.807 kb on - strand at 954.808 kb on + strand at 954.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 951,543 + -0.1 951,621 + SMa1688 0.12 +0.2 951,622 - SMa1688 0.13 -1.9 951,742 - SMa1688 0.41 -0.1 951,777 + SMa1688 0.50 -0.7 951,777 + SMa1688 0.50 +0.7 952,094 + +0.4 952,095 - +0.6 952,136 - +2.0 952,406 - +0.1 952,415 - -0.3 952,415 - -0.3 952,415 - +0.1 952,415 - +0.1 952,425 + +0.7 952,524 + +0.3 952,582 + +0.5 952,582 + +0.6 952,582 + -0.1 952,624 + -0.8 952,624 + +1.5 952,625 - +2.0 953,092 + SMa1691 0.39 +0.8 953,092 + SMa1691 0.39 -0.5 953,362 + SMa1691 0.57 -1.4 953,498 - SMa1691 0.67 -0.1 953,583 - SMa1691 0.73 -1.1 953,590 + SMa1691 0.73 -0.3 953,590 + SMa1691 0.73 -1.8 953,591 - SMa1691 0.73 -2.5 953,645 - SMa1691 0.77 +0.2 953,727 + SMa1691 0.82 -0.3 953,731 + SMa1691 0.83 -0.5 953,731 + SMa1691 0.83 +1.3 953,731 + SMa1691 0.83 -0.2 953,731 + SMa1691 0.83 -0.6 953,731 + SMa1691 0.83 -1.6 953,731 + SMa1691 0.83 -1.2 953,732 - SMa1691 0.83 -3.1 953,732 - SMa1691 0.83 -0.7 953,733 + SMa1691 0.83 -0.1 953,812 - SMa1691 0.88 -0.5 953,812 - SMa1691 0.88 -0.6 953,897 - +0.7 953,897 - +0.4 953,903 + +0.4 953,989 - -1.6 954,023 + +2.4 954,023 + +0.7 954,023 + +0.5 954,084 - -0.5 954,166 + -1.4 954,166 + +0.2 954,166 + +0.8 954,167 - +0.9 954,167 - -0.2 954,239 + -0.8 954,240 - -0.4 954,330 + -2.0 954,331 - +0.2 954,338 - -0.2 954,390 + +0.4 954,391 - -0.7 954,415 - -1.9 954,415 - -0.1 954,507 - -0.9 954,783 - +0.3 954,807 - +0.3 954,808 + -0.6 954,808 + +1.7
Or see this region's nucleotide sequence