Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1625 and SMa1626 are separated by 104 nucleotides SMa1626 and SMa1629 are separated by 140 nucleotides SMa1629 and SMa5038 overlap by 246 nucleotides SMa5038 and SMa1630 overlap by 52 nucleotides SMa1630 and SMa1632 are separated by 48 nucleotides
SMa1625: SMa1625 - LysR family transcriptional regulator, at 904,985 to 905,908
SMa1625
SMa1626: SMa1626 - hypothetical protein, at 906,013 to 906,672
SMa1626
SMa1629: SMa1629 - short chain dehydrogenase, at 906,813 to 907,592
SMa1629
SMa5038: SMa5038 - hypothetical protein, at 907,347 to 907,643
SMa5038
SMa1630: SMa1630 - hypothetical protein, at 907,592 to 907,912
SMa1630
SMa1632: SMa1632 - LysR family transcriptional regulator, at 907,961 to 908,914
SMa1632
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 905.964 kb on + strand at 905.965 kb on - strand at 906.012 kb on + strand at 906.363 kb on + strand, within SMa1626 at 906.363 kb on + strand, within SMa1626 at 906.363 kb on + strand, within SMa1626 at 906.364 kb on - strand, within SMa1626 at 906.367 kb on + strand, within SMa1626 at 906.368 kb on - strand, within SMa1626 at 906.671 kb on - strand at 906.814 kb on + strand at 907.110 kb on - strand, within SMa1629 at 907.110 kb on - strand, within SMa1629 at 907.111 kb on + strand, within SMa1629 at 907.141 kb on + strand, within SMa1629 at 907.142 kb on - strand, within SMa1629 at 907.642 kb on - strand at 907.642 kb on - strand at 907.740 kb on + strand, within SMa1630 at 907.741 kb on - strand, within SMa1630 at 907.884 kb on + strand at 907.884 kb on + strand at 907.885 kb on - strand at 907.885 kb on - strand at 907.885 kb on - strand at 907.967 kb on - strand at 908.124 kb on + strand, within SMa1632 at 908.124 kb on + strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.413 kb on + strand, within SMa1632 at 908.528 kb on + strand, within SMa1632
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 905,964 + -1.5 905,965 - -0.0 906,012 + +0.3 906,363 + SMa1626 0.53 +0.6 906,363 + SMa1626 0.53 +0.4 906,363 + SMa1626 0.53 -1.2 906,364 - SMa1626 0.53 -0.1 906,367 + SMa1626 0.54 +1.1 906,368 - SMa1626 0.54 -3.0 906,671 - -1.1 906,814 + -1.4 907,110 - SMa1629 0.38 -0.5 907,110 - SMa1629 0.38 -0.4 907,111 + SMa1629 0.38 -0.1 907,141 + SMa1629 0.42 -0.6 907,142 - SMa1629 0.42 -0.3 907,642 - -0.2 907,642 - +0.6 907,740 + SMa1630 0.46 +1.0 907,741 - SMa1630 0.46 -2.2 907,884 + -0.3 907,884 + -0.4 907,885 - +0.0 907,885 - +0.6 907,885 - +0.4 907,967 - -1.0 908,124 + SMa1632 0.17 +1.3 908,124 + SMa1632 0.17 -0.2 908,125 - SMa1632 0.17 +1.1 908,125 - SMa1632 0.17 -1.9 908,125 - SMa1632 0.17 -2.3 908,413 + SMa1632 0.47 +0.4 908,528 + SMa1632 0.59 -1.0
Or see this region's nucleotide sequence