Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1552 and SMa1554 overlap by 4 nucleotides SMa1554 and SMa1556 overlap by 68 nucleotides
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491
SMa1554
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.826 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 859.116 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.293 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.630 kb on + strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.706 kb on - strand at 859.796 kb on - strand at 859.883 kb on - strand at 859.883 kb on - strand at 859.897 kb on - strand, within SMa1554 at 859.897 kb on - strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.950 kb on - strand, within SMa1554 at 860.067 kb on - strand, within SMa1554 at 860.079 kb on + strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.489 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.524 kb on + strand at 860.524 kb on + strand at 860.643 kb on + strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.694 kb on - strand, within SMa1556 at 861.444 kb on + strand, within SMa1556
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 858,826 + SMa1552 0.27 +0.5 858,826 + SMa1552 0.27 -1.5 858,827 - SMa1552 0.27 +0.1 858,827 - SMa1552 0.27 -0.6 859,116 + SMa1552 0.48 -2.2 859,221 + SMa1552 0.56 -0.3 859,221 + SMa1552 0.56 +0.4 859,292 + SMa1552 0.61 -1.0 859,292 + SMa1552 0.61 -0.7 859,293 - SMa1552 0.61 -0.6 859,597 - SMa1552 0.83 -1.3 859,597 - SMa1552 0.83 -1.6 859,630 + SMa1552 0.86 -0.8 859,631 - SMa1552 0.86 -0.7 859,631 - SMa1552 0.86 -0.1 859,631 - SMa1552 0.86 -0.8 859,631 - SMa1552 0.86 -0.3 859,706 - -0.3 859,796 - +0.2 859,883 - +0.6 859,883 - -1.5 859,897 - SMa1554 0.11 -0.4 859,897 - SMa1554 0.11 -0.4 859,949 + SMa1554 0.19 +0.2 859,949 + SMa1554 0.19 -0.6 859,949 + SMa1554 0.19 -0.2 859,950 - SMa1554 0.19 -1.5 860,067 - SMa1554 0.36 +0.2 860,079 + SMa1554 0.38 +0.6 860,139 - SMa1554 0.47 +1.5 860,139 - SMa1554 0.47 -0.1 860,489 + -0.7 860,496 + +0.2 860,496 + +1.3 860,496 + +1.1 860,524 + -1.6 860,524 + -0.1 860,643 + SMa1556 0.13 +1.2 860,644 - SMa1556 0.13 +0.5 860,644 - SMa1556 0.13 -0.3 860,644 - SMa1556 0.13 +0.2 860,644 - SMa1556 0.13 +1.3 860,694 - SMa1556 0.16 +0.2 861,444 + SMa1556 0.60 +1.9
Or see this region's nucleotide sequence