Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1462 and SMa1465 are separated by 23 nucleotides SMa1465 and SMa1466 overlap by 4 nucleotides
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
SMa1465: SMa1465 - ABC transporter permease, at 806,502 to 807,257
SMa1465
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
Position (kb) 806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 805.502 kb on - strand at 805.504 kb on - strand at 805.590 kb on - strand at 805.610 kb on + strand at 805.772 kb on + strand, within SMa1462 at 805.772 kb on + strand, within SMa1462 at 805.886 kb on + strand, within SMa1462 at 805.887 kb on - strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.073 kb on + strand, within SMa1462 at 806.090 kb on + strand, within SMa1462 at 806.091 kb on - strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.101 kb on - strand, within SMa1462 at 806.229 kb on + strand, within SMa1462 at 806.230 kb on - strand, within SMa1462 at 806.503 kb on + strand at 806.537 kb on - strand at 806.540 kb on - strand at 806.845 kb on + strand, within SMa1465 at 806.845 kb on + strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.907 kb on - strand, within SMa1465 at 807.103 kb on + strand, within SMa1465 at 807.121 kb on + strand, within SMa1465 at 807.280 kb on - strand at 807.280 kb on - strand at 807.297 kb on + strand at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 805,502 - -0.2 805,504 - -1.3 805,590 - -0.4 805,610 + +0.8 805,772 + SMa1462 0.21 -0.3 805,772 + SMa1462 0.21 -0.3 805,886 + SMa1462 0.33 -1.8 805,887 - SMa1462 0.34 -3.4 806,005 + SMa1462 0.47 +0.5 806,005 + SMa1462 0.47 +0.7 806,005 + SMa1462 0.47 +1.6 806,005 + SMa1462 0.47 +0.4 806,005 + SMa1462 0.47 -0.4 806,006 - SMa1462 0.47 +0.3 806,006 - SMa1462 0.47 -0.4 806,006 - SMa1462 0.47 +0.2 806,006 - SMa1462 0.47 -0.5 806,006 - SMa1462 0.47 -2.9 806,007 + SMa1462 0.47 -0.0 806,007 + SMa1462 0.47 -0.1 806,024 + SMa1462 0.49 +0.4 806,024 + SMa1462 0.49 +0.7 806,073 + SMa1462 0.54 +0.3 806,090 + SMa1462 0.56 -0.1 806,091 - SMa1462 0.56 +0.1 806,096 + SMa1462 0.57 -0.5 806,096 + SMa1462 0.57 +0.7 806,096 + SMa1462 0.57 -0.0 806,096 + SMa1462 0.57 +0.7 806,096 + SMa1462 0.57 +1.0 806,096 + SMa1462 0.57 +0.0 806,096 + SMa1462 0.57 +1.9 806,097 - SMa1462 0.57 +2.1 806,097 - SMa1462 0.57 +0.7 806,097 - SMa1462 0.57 -0.5 806,097 - SMa1462 0.57 -0.3 806,101 - SMa1462 0.58 +0.4 806,229 + SMa1462 0.72 -0.9 806,230 - SMa1462 0.72 +0.0 806,503 + +0.1 806,537 - +1.9 806,540 - +1.7 806,845 + SMa1465 0.45 +1.9 806,845 + SMa1465 0.45 -1.9 806,846 - SMa1465 0.46 -1.2 806,846 - SMa1465 0.46 -1.6 806,846 - SMa1465 0.46 -0.8 806,907 - SMa1465 0.54 +0.3 807,103 + SMa1465 0.79 -1.8 807,121 + SMa1465 0.82 -1.4 807,280 - -1.4 807,280 - -1.5 807,297 + +0.2 807,708 + SMa1466 0.41 +1.0 807,708 + SMa1466 0.41 -0.2 807,737 - SMa1466 0.43 -0.5 807,737 - SMa1466 0.43 -0.5 808,072 + SMa1466 0.73 -0.5 808,123 - SMa1466 0.78 -0.3
Or see this region's nucleotide sequence