Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1220 and SMa1223 are separated by 314 nucleotides SMa1223 and SMa1225 are separated by 80 nucleotides SMa1225 and SMa1226 are separated by 79 nucleotides
SMa1220: SMa1220 - cbb3-type cytochrome c oxidase subunit I, at 669,143 to 670,762
SMa1220
SMa1223: SMa1223 - hypothetical protein, at 671,077 to 671,532
SMa1223
SMa1225: SMa1225 - transcriptional regulator FixK, at 671,613 to 672,248
SMa1225
SMa1226: SMa1226 - FixT1 inhibitor of FixL autophosphorylation, at 672,328 to 672,675
SMa1226
Position (kb) 671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 670.120 kb on - strand, within SMa1220 at 670.120 kb on - strand, within SMa1220 at 670.206 kb on + strand, within SMa1220 at 670.224 kb on + strand, within SMa1220 at 670.356 kb on + strand, within SMa1220 at 670.356 kb on + strand, within SMa1220 at 670.563 kb on + strand, within SMa1220 at 670.766 kb on - strand at 670.766 kb on - strand at 670.894 kb on + strand at 670.894 kb on + strand at 671.013 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.078 kb on + strand at 671.080 kb on + strand at 671.080 kb on + strand at 671.081 kb on - strand at 671.081 kb on - strand at 671.081 kb on - strand at 671.081 kb on - strand at 671.081 kb on - strand at 671.267 kb on - strand, within SMa1223 at 671.267 kb on - strand, within SMa1223 at 671.385 kb on + strand, within SMa1223 at 671.396 kb on + strand, within SMa1223 at 672.329 kb on + strand at 672.329 kb on + strand at 672.330 kb on - strand at 672.333 kb on + strand at 672.394 kb on + strand, within SMa1226 at 672.505 kb on + strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 670,120 - SMa1220 0.60 -0.1 670,120 - SMa1220 0.60 +0.2 670,206 + SMa1220 0.66 -2.4 670,224 + SMa1220 0.67 +0.0 670,356 + SMa1220 0.75 -0.8 670,356 + SMa1220 0.75 +0.6 670,563 + SMa1220 0.88 +0.7 670,766 - -0.1 670,766 - -0.7 670,894 + +1.0 670,894 + -1.4 671,013 + +1.2 671,078 + +0.5 671,078 + +0.6 671,078 + +0.9 671,078 + +1.9 671,078 + -0.2 671,078 + +0.1 671,078 + +0.6 671,080 + -0.9 671,080 + +0.1 671,081 - -1.1 671,081 - +1.9 671,081 - -0.9 671,081 - -0.0 671,081 - -0.2 671,267 - SMa1223 0.42 -0.6 671,267 - SMa1223 0.42 -0.9 671,385 + SMa1223 0.68 -1.0 671,396 + SMa1223 0.70 +0.1 672,329 + +0.2 672,329 + +0.4 672,330 - +1.9 672,333 + -2.3 672,394 + SMa1226 0.19 +0.6 672,505 + SMa1226 0.51 -2.4 672,506 - SMa1226 0.51 -0.6 672,506 - SMa1226 0.51 -0.5 672,506 - SMa1226 0.51 -3.1 672,508 + SMa1226 0.52 +0.1 672,508 + SMa1226 0.52 +0.1 672,508 + SMa1226 0.52 +0.2 672,509 - SMa1226 0.52 +0.6 672,509 - SMa1226 0.52 -2.9 672,509 - SMa1226 0.52 +0.3 672,509 - SMa1226 0.52 -0.5 672,509 - SMa1226 0.52 -2.1 672,509 - SMa1226 0.52 -1.1
Or see this region's nucleotide sequence