Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0806 and SMa0809 are separated by 242 nucleotides SMa0809 and SMa0810 are separated by 619 nucleotides
SMa0806: SMa0806 - SyrB-like regulator, at 441,631 to 442,086
SMa0806
SMa0809: SMa0809 - hypothetical protein, at 442,329 to 442,967
SMa0809
SMa0810: SMa0810 - nitrogen fixation protein FixU, at 443,587 to 443,793
SMa0810
Position (kb) 442
443 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 441.360 kb on + strand at 441.360 kb on + strand at 441.360 kb on + strand at 441.361 kb on - strand at 441.504 kb on - strand at 441.504 kb on - strand at 441.614 kb on + strand at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.789 kb on + strand, within SMa0806 at 441.790 kb on - strand, within SMa0806 at 441.879 kb on + strand, within SMa0806 at 441.882 kb on - strand, within SMa0806 at 441.918 kb on + strand, within SMa0806 at 441.952 kb on - strand, within SMa0806 at 442.252 kb on + strand at 442.252 kb on + strand at 442.254 kb on + strand at 442.255 kb on - strand at 442.415 kb on + strand at 442.452 kb on - strand, within SMa0809 at 442.576 kb on + strand, within SMa0809 at 442.576 kb on + strand, within SMa0809 at 442.577 kb on - strand, within SMa0809 at 442.844 kb on - strand, within SMa0809 at 442.844 kb on - strand, within SMa0809 at 442.987 kb on - strand at 443.049 kb on + strand at 443.050 kb on - strand at 443.050 kb on - strand at 443.242 kb on + strand at 443.243 kb on - strand at 443.310 kb on + strand at 443.364 kb on - strand at 443.366 kb on + strand at 443.398 kb on - strand at 443.461 kb on + strand at 443.462 kb on - strand at 443.557 kb on - strand at 443.681 kb on - strand, within SMa0810 at 443.695 kb on + strand, within SMa0810 at 443.696 kb on - strand, within SMa0810 at 443.751 kb on - strand, within SMa0810 at 443.751 kb on - strand, within SMa0810 at 443.855 kb on + strand at 443.855 kb on + strand at 443.856 kb on - strand at 443.856 kb on - strand at 443.861 kb on + strand at 443.861 kb on + strand at 443.861 kb on + strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.944 kb on + strand at 443.945 kb on - strand at 443.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 441,360 + -0.9 441,360 + -0.2 441,360 + -1.9 441,361 - +0.0 441,504 - -0.4 441,504 - -1.2 441,614 + -0.4 441,789 + SMa0806 0.35 -1.5 441,789 + SMa0806 0.35 +0.2 441,789 + SMa0806 0.35 -0.6 441,790 - SMa0806 0.35 -0.6 441,879 + SMa0806 0.54 -0.6 441,882 - SMa0806 0.55 -0.2 441,918 + SMa0806 0.63 -0.4 441,952 - SMa0806 0.70 -0.4 442,252 + +2.3 442,252 + -0.6 442,254 + +1.7 442,255 - -0.7 442,415 + -0.4 442,452 - SMa0809 0.19 -1.2 442,576 + SMa0809 0.39 -0.1 442,576 + SMa0809 0.39 +0.2 442,577 - SMa0809 0.39 -1.5 442,844 - SMa0809 0.81 -0.6 442,844 - SMa0809 0.81 -0.4 442,987 - -0.4 443,049 + -1.1 443,050 - -1.3 443,050 - +0.8 443,242 + -2.5 443,243 - +2.9 443,310 + +0.1 443,364 - +0.4 443,366 + +0.6 443,398 - -1.0 443,461 + +0.0 443,462 - +0.6 443,557 - +0.8 443,681 - SMa0810 0.45 -0.9 443,695 + SMa0810 0.52 -0.0 443,696 - SMa0810 0.53 +1.9 443,751 - SMa0810 0.79 -0.3 443,751 - SMa0810 0.79 +1.8 443,855 + -0.3 443,855 + -0.1 443,856 - +0.1 443,856 - -1.0 443,861 + +0.2 443,861 + -1.3 443,861 + -0.1 443,862 - +0.2 443,862 - +0.3 443,862 - +0.3 443,862 - +1.3 443,944 + -0.9 443,945 - +0.3 443,945 - +0.3
Or see this region's nucleotide sequence