Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0791 and SMa0792 are separated by 18 nucleotides SMa0792 and SMa0793 overlap by 4 nucleotides SMa0793 and SMa0794 overlap by 4 nucleotides
SMa0791: SMa0791 - hypothetical protein, at 430,599 to 431,201
SMa0791
SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053
SMa0792
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.598 kb on + strand at 430.598 kb on + strand at 430.598 kb on + strand at 430.599 kb on - strand at 430.679 kb on - strand, within SMa0791 at 430.679 kb on - strand, within SMa0791 at 430.789 kb on + strand, within SMa0791 at 430.790 kb on - strand, within SMa0791 at 430.793 kb on + strand, within SMa0791 at 430.793 kb on + strand, within SMa0791 at 430.901 kb on + strand, within SMa0791 at 430.924 kb on - strand at 430.950 kb on + strand, within SMa0791 at 430.951 kb on - strand, within SMa0791 at 430.968 kb on - strand, within SMa0791 at 431.041 kb on - strand, within SMa0791 at 431.232 kb on - strand at 431.232 kb on - strand at 431.298 kb on + strand at 431.326 kb on + strand, within SMa0792 at 431.327 kb on - strand, within SMa0792 at 431.327 kb on - strand, within SMa0792 at 431.356 kb on + strand, within SMa0792 at 431.414 kb on - strand, within SMa0792 at 431.414 kb on - strand, within SMa0792 at 431.605 kb on - strand, within SMa0792 at 431.605 kb on - strand, within SMa0792 at 431.791 kb on - strand, within SMa0792 at 431.791 kb on - strand, within SMa0792 at 431.832 kb on + strand, within SMa0792 at 431.833 kb on - strand, within SMa0792 at 431.833 kb on - strand, within SMa0792 at 431.975 kb on + strand at 431.975 kb on + strand at 431.976 kb on - strand at 431.976 kb on - strand at 431.976 kb on - strand at 431.976 kb on - strand at 431.976 kb on - strand at 431.986 kb on + strand at 431.987 kb on - strand at 432.160 kb on + strand, within SMa0793 at 432.175 kb on + strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.236 kb on + strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.606 kb on + strand, within SMa0793 at 432.741 kb on - strand, within SMa0793 at 432.874 kb on + strand, within SMa0793 at 432.875 kb on - strand, within SMa0793 at 432.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 430,598 + +0.5 430,598 + +1.3 430,598 + +1.0 430,599 - -1.5 430,679 - SMa0791 0.13 +0.5 430,679 - SMa0791 0.13 -2.9 430,789 + SMa0791 0.32 -0.6 430,790 - SMa0791 0.32 -0.3 430,793 + SMa0791 0.32 +2.7 430,793 + SMa0791 0.32 +0.5 430,901 + SMa0791 0.50 -1.6 430,924 - +1.0 430,950 + SMa0791 0.58 +0.7 430,951 - SMa0791 0.58 -1.3 430,968 - SMa0791 0.61 +0.1 431,041 - SMa0791 0.73 -1.8 431,232 - -0.6 431,232 - -1.0 431,298 + -0.1 431,326 + SMa0792 0.13 -1.5 431,327 - SMa0792 0.13 -2.7 431,327 - SMa0792 0.13 +0.4 431,356 + SMa0792 0.16 -1.0 431,414 - SMa0792 0.23 -0.8 431,414 - SMa0792 0.23 -0.7 431,605 - SMa0792 0.46 +0.8 431,605 - SMa0792 0.46 -1.0 431,791 - SMa0792 0.68 +0.6 431,791 - SMa0792 0.68 -1.3 431,832 + SMa0792 0.73 -2.4 431,833 - SMa0792 0.74 -2.6 431,833 - SMa0792 0.74 -0.4 431,975 + +0.1 431,975 + -1.6 431,976 - +1.3 431,976 - +0.0 431,976 - -0.4 431,976 - -0.3 431,976 - -0.7 431,986 + +2.0 431,987 - -0.2 432,160 + SMa0793 0.12 -0.6 432,175 + SMa0793 0.13 +1.8 432,176 - SMa0793 0.13 -1.7 432,176 - SMa0793 0.13 -0.1 432,236 + SMa0793 0.20 -0.0 432,451 - SMa0793 0.43 -0.3 432,451 - SMa0793 0.43 +0.8 432,451 - SMa0793 0.43 -0.7 432,606 + SMa0793 0.59 +0.3 432,741 - SMa0793 0.74 -0.4 432,874 + SMa0793 0.88 +0.1 432,875 - SMa0793 0.88 +0.7 432,923 + +1.7
Or see this region's nucleotide sequence