Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0690 and SMa0693 are separated by 851 nucleotides SMa0693 and SMa0695 are separated by 35 nucleotides
SMa0690: SMa0690 - hypothetical protein, at 373,456 to 374,856
SMa0690
SMa0693: SMa0693 - arginine deiminase, at 375,708 to 376,937
SMa0693
SMa0695: SMa0695 - ornithine carbamoyltransferase, at 376,973 to 377,977
SMa0695
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 375.079 kb on + strand at 375.184 kb on - strand at 375.188 kb on - strand at 375.191 kb on + strand at 375.192 kb on - strand at 375.195 kb on - strand at 375.247 kb on + strand at 375.247 kb on + strand at 375.248 kb on - strand at 375.251 kb on - strand at 375.379 kb on + strand at 375.434 kb on + strand at 376.115 kb on + strand, within SMa0693 at 376.115 kb on + strand, within SMa0693 at 376.116 kb on - strand, within SMa0693 at 376.272 kb on + strand, within SMa0693 at 376.272 kb on + strand, within SMa0693 at 376.422 kb on + strand, within SMa0693 at 376.423 kb on - strand, within SMa0693 at 376.423 kb on - strand, within SMa0693 at 376.579 kb on + strand, within SMa0693 at 376.579 kb on + strand, within SMa0693 at 376.579 kb on + strand, within SMa0693 at 376.596 kb on + strand, within SMa0693 at 376.596 kb on + strand at 376.597 kb on - strand, within SMa0693 at 376.704 kb on - strand, within SMa0693 at 376.725 kb on + strand, within SMa0693 at 376.725 kb on + strand, within SMa0693 at 376.726 kb on - strand, within SMa0693 at 376.812 kb on + strand, within SMa0693 at 376.813 kb on - strand, within SMa0693 at 376.813 kb on - strand, within SMa0693 at 376.814 kb on + strand, within SMa0693 at 376.814 kb on + strand, within SMa0693 at 376.814 kb on + strand, within SMa0693 at 376.815 kb on - strand at 377.018 kb on + strand at 377.019 kb on - strand at 377.040 kb on - strand at 377.046 kb on + strand at 377.149 kb on + strand, within SMa0695 at 377.150 kb on - strand, within SMa0695 at 377.198 kb on - strand, within SMa0695 at 377.202 kb on - strand, within SMa0695 at 377.351 kb on + strand, within SMa0695 at 377.351 kb on + strand, within SMa0695 at 377.352 kb on - strand, within SMa0695 at 377.373 kb on - strand, within SMa0695 at 377.373 kb on - strand, within SMa0695 at 377.408 kb on - strand, within SMa0695 at 377.408 kb on - strand, within SMa0695 at 377.420 kb on - strand, within SMa0695 at 377.448 kb on - strand, within SMa0695 at 377.453 kb on + strand, within SMa0695 at 377.454 kb on - strand, within SMa0695 at 377.455 kb on + strand, within SMa0695 at 377.455 kb on + strand, within SMa0695 at 377.508 kb on + strand, within SMa0695 at 377.529 kb on + strand, within SMa0695 at 377.587 kb on + strand, within SMa0695 at 377.587 kb on + strand, within SMa0695 at 377.587 kb on + strand, within SMa0695 at 377.725 kb on + strand, within SMa0695 at 377.725 kb on + strand, within SMa0695 at 377.812 kb on + strand, within SMa0695 at 377.908 kb on - strand at 377.908 kb on - strand at 377.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 375,079 + +0.5 375,184 - +0.4 375,188 - -3.1 375,191 + +0.7 375,192 - +0.1 375,195 - +0.2 375,247 + +0.2 375,247 + +0.0 375,248 - -1.0 375,251 - -2.0 375,379 + -0.1 375,434 + +0.3 376,115 + SMa0693 0.33 +0.8 376,115 + SMa0693 0.33 -1.1 376,116 - SMa0693 0.33 +0.3 376,272 + SMa0693 0.46 -1.0 376,272 + SMa0693 0.46 -1.0 376,422 + SMa0693 0.58 +0.4 376,423 - SMa0693 0.58 -3.5 376,423 - SMa0693 0.58 -1.3 376,579 + SMa0693 0.71 -0.0 376,579 + SMa0693 0.71 +1.2 376,579 + SMa0693 0.71 -0.4 376,596 + SMa0693 0.72 -0.4 376,596 + -1.5 376,597 - SMa0693 0.72 -1.1 376,704 - SMa0693 0.81 -0.6 376,725 + SMa0693 0.83 +1.2 376,725 + SMa0693 0.83 -0.5 376,726 - SMa0693 0.83 +0.3 376,812 + SMa0693 0.90 -2.4 376,813 - SMa0693 0.90 -2.2 376,813 - SMa0693 0.90 +0.9 376,814 + SMa0693 0.90 -2.3 376,814 + SMa0693 0.90 +0.8 376,814 + SMa0693 0.90 -0.5 376,815 - -1.2 377,018 + -0.1 377,019 - +1.1 377,040 - -0.3 377,046 + -0.7 377,149 + SMa0695 0.18 -0.4 377,150 - SMa0695 0.18 -2.1 377,198 - SMa0695 0.22 +1.0 377,202 - SMa0695 0.23 -0.3 377,351 + SMa0695 0.38 -0.3 377,351 + SMa0695 0.38 +0.4 377,352 - SMa0695 0.38 -1.6 377,373 - SMa0695 0.40 -0.3 377,373 - SMa0695 0.40 +2.8 377,408 - SMa0695 0.43 -0.9 377,408 - SMa0695 0.43 +0.1 377,420 - SMa0695 0.44 +1.3 377,448 - SMa0695 0.47 +1.3 377,453 + SMa0695 0.48 -0.8 377,454 - SMa0695 0.48 -0.3 377,455 + SMa0695 0.48 +1.3 377,455 + SMa0695 0.48 -0.5 377,508 + SMa0695 0.53 -0.5 377,529 + SMa0695 0.55 -0.0 377,587 + SMa0695 0.61 +1.6 377,587 + SMa0695 0.61 +0.2 377,587 + SMa0695 0.61 -0.0 377,725 + SMa0695 0.75 -2.2 377,725 + SMa0695 0.75 +0.1 377,812 + SMa0695 0.83 +0.6 377,908 - +0.2 377,908 - +1.0 377,908 - +1.1
Or see this region's nucleotide sequence