Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0298 and SMa0299 are separated by 2 nucleotides SMa0299 and SMa0300 overlap by 4 nucleotides SMa0300 and SMa0301 overlap by 4 nucleotides SMa0301 and SMa0302 are separated by 69 nucleotides
SMa0298: SMa0298 - ABC transporter ATP-binding protein, at 163,041 to 164,855
SMa0298
SMa0299: SMa0299 - ABC transporter permease, at 164,858 to 165,745
SMa0299
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
SMa0301: SMa0301 - hypothetical protein, at 166,692 to 167,360
SMa0301
SMa0302: SMa0302 - ABC transporter substrate-binding protein, at 167,430 to 168,956
SMa0302
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.815 kb on + strand at 164.816 kb on - strand at 164.856 kb on - strand at 164.978 kb on + strand, within SMa0299 at 164.979 kb on - strand, within SMa0299 at 165.082 kb on - strand, within SMa0299 at 165.085 kb on + strand, within SMa0299 at 165.085 kb on + strand, within SMa0299 at 165.086 kb on - strand, within SMa0299 at 165.086 kb on - strand, within SMa0299 at 165.161 kb on - strand, within SMa0299 at 165.192 kb on + strand, within SMa0299 at 165.193 kb on - strand, within SMa0299 at 165.252 kb on + strand, within SMa0299 at 165.403 kb on + strand, within SMa0299 at 165.403 kb on + strand, within SMa0299 at 165.406 kb on - strand, within SMa0299 at 165.481 kb on + strand, within SMa0299 at 165.482 kb on - strand, within SMa0299 at 165.598 kb on - strand, within SMa0299 at 165.736 kb on + strand at 165.813 kb on - strand at 165.813 kb on - strand at 165.902 kb on + strand, within SMa0300 at 165.903 kb on - strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.055 kb on + strand, within SMa0300 at 166.056 kb on - strand, within SMa0300 at 166.107 kb on - strand, within SMa0300 at 166.119 kb on + strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.120 kb on - strand, within SMa0300 at 166.364 kb on + strand, within SMa0300 at 166.365 kb on - strand, within SMa0300 at 166.496 kb on + strand, within SMa0300 at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.925 kb on - strand, within SMa0301 at 166.927 kb on + strand, within SMa0301 at 167.000 kb on + strand, within SMa0301 at 167.001 kb on - strand, within SMa0301 at 167.034 kb on - strand, within SMa0301 at 167.056 kb on + strand, within SMa0301 at 167.057 kb on - strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.102 kb on - strand, within SMa0301 at 167.366 kb on + strand at 167.366 kb on + strand at 167.367 kb on - strand at 167.456 kb on - strand at 167.456 kb on - strand at 167.488 kb on + strand at 167.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 164,815 + +2.0 164,816 - +0.3 164,856 - +0.4 164,978 + SMa0299 0.14 +0.1 164,979 - SMa0299 0.14 +0.9 165,082 - SMa0299 0.25 -1.0 165,085 + SMa0299 0.26 -3.1 165,085 + SMa0299 0.26 -0.2 165,086 - SMa0299 0.26 -0.3 165,086 - SMa0299 0.26 +0.8 165,161 - SMa0299 0.34 -0.1 165,192 + SMa0299 0.38 -0.2 165,193 - SMa0299 0.38 -1.4 165,252 + SMa0299 0.44 -0.1 165,403 + SMa0299 0.61 +1.4 165,403 + SMa0299 0.61 +0.7 165,406 - SMa0299 0.62 +0.5 165,481 + SMa0299 0.70 -2.5 165,482 - SMa0299 0.70 +2.3 165,598 - SMa0299 0.83 -0.7 165,736 + +0.8 165,813 - -0.3 165,813 - +2.6 165,902 + SMa0300 0.17 -1.1 165,903 - SMa0300 0.17 +0.3 166,055 + SMa0300 0.33 +0.2 166,055 + SMa0300 0.33 -0.1 166,055 + SMa0300 0.33 +0.3 166,055 + SMa0300 0.33 +1.4 166,056 - SMa0300 0.33 -0.3 166,107 - SMa0300 0.38 +0.4 166,119 + SMa0300 0.40 +1.4 166,120 - SMa0300 0.40 -0.2 166,120 - SMa0300 0.40 +1.2 166,364 + SMa0300 0.65 +0.0 166,365 - SMa0300 0.65 +1.0 166,496 + SMa0300 0.79 +2.0 166,685 - -0.5 166,685 - -0.9 166,685 - +0.9 166,685 - +0.3 166,789 + SMa0301 0.14 -0.1 166,789 + SMa0301 0.14 +0.7 166,789 + SMa0301 0.14 +2.6 166,790 - SMa0301 0.15 +0.8 166,790 - SMa0301 0.15 -0.1 166,790 - SMa0301 0.15 +2.3 166,925 - SMa0301 0.35 -1.0 166,927 + SMa0301 0.35 -0.3 167,000 + SMa0301 0.46 +1.1 167,001 - SMa0301 0.46 -0.1 167,034 - SMa0301 0.51 -1.3 167,056 + SMa0301 0.54 +0.1 167,057 - SMa0301 0.55 +1.6 167,101 + SMa0301 0.61 -0.2 167,101 + SMa0301 0.61 +0.6 167,102 - SMa0301 0.61 +0.3 167,366 + +0.1 167,366 + -1.2 167,367 - +0.5 167,456 - +0.7 167,456 - -2.4 167,488 + -0.4 167,546 + -1.0
Or see this region's nucleotide sequence