Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21246 and SM_b21247 are separated by 40 nucleotides SM_b21247 and SM_b21248 are separated by 68 nucleotides SM_b21248 and SM_b21249 are separated by 31 nucleotides
SM_b21246: SM_b21246 - UDP-phosphate galactose phosphotransferase, at 814,934 to 815,626
_b21246
SM_b21247: SM_b21247 - hypothetical protein, at 815,667 to 816,353
_b21247
SM_b21248: SM_b21248 - aminotransferase, at 816,422 to 817,612
_b21248
SM_b21249: SM_b21249 - sulfotransferase, at 817,644 to 818,486
_b21249
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.683 kb on + strand at 815.684 kb on - strand at 815.897 kb on - strand, within SM_b21247 at 816.106 kb on - strand, within SM_b21247 at 816.141 kb on + strand, within SM_b21247 at 816.141 kb on + strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.179 kb on + strand, within SM_b21247 at 816.351 kb on + strand at 816.352 kb on - strand at 816.386 kb on + strand at 816.387 kb on - strand at 816.387 kb on - strand at 816.401 kb on + strand at 816.440 kb on + strand at 816.536 kb on + strand at 816.536 kb on + strand at 816.536 kb on + strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.555 kb on + strand, within SM_b21248 at 816.754 kb on - strand, within SM_b21248 at 816.832 kb on - strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.068 kb on - strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.298 kb on + strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248 at 817.427 kb on - strand, within SM_b21248 at 817.610 kb on + strand at 817.744 kb on + strand, within SM_b21249 at 817.745 kb on - strand, within SM_b21249 at 817.831 kb on - strand, within SM_b21249 at 818.020 kb on + strand, within SM_b21249 at 818.021 kb on - strand, within SM_b21249 at 818.040 kb on - strand, within SM_b21249 at 818.059 kb on - strand, within SM_b21249 at 818.113 kb on + strand, within SM_b21249 at 818.114 kb on - strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.145 kb on + strand, within SM_b21249 at 818.146 kb on - strand, within SM_b21249 at 818.287 kb on - strand, within SM_b21249 at 818.303 kb on + strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.304 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.314 kb on - strand, within SM_b21249 at 818.362 kb on + strand, within SM_b21249 at 818.363 kb on - strand, within SM_b21249 at 818.393 kb on - strand, within SM_b21249 at 818.432 kb on + strand at 818.440 kb on - strand at 818.534 kb on + strand at 818.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 815,473 + SM_b21246 0.78 -1.7 815,473 + SM_b21246 0.78 -0.7 815,473 + SM_b21246 0.78 -1.0 815,474 - SM_b21246 0.78 +0.8 815,474 - SM_b21246 0.78 +1.1 815,474 - SM_b21246 0.78 -1.4 815,683 + -0.7 815,684 - -0.4 815,897 - SM_b21247 0.33 -0.9 816,106 - SM_b21247 0.64 -1.1 816,141 + SM_b21247 0.69 -0.2 816,141 + SM_b21247 0.69 -1.5 816,142 - SM_b21247 0.69 +1.2 816,142 - SM_b21247 0.69 -0.3 816,142 - SM_b21247 0.69 -1.7 816,142 - SM_b21247 0.69 -0.3 816,179 + SM_b21247 0.75 -1.3 816,351 + +0.1 816,352 - +0.0 816,386 + +0.2 816,387 - -0.8 816,387 - +0.7 816,401 + +0.7 816,440 + +1.8 816,536 + -0.5 816,536 + +1.0 816,536 + +0.3 816,537 - +1.0 816,537 - +0.4 816,537 - -0.4 816,537 - +1.9 816,537 - +0.8 816,555 + SM_b21248 0.11 -0.4 816,754 - SM_b21248 0.28 +0.6 816,832 - SM_b21248 0.34 -1.3 816,867 + SM_b21248 0.37 +0.6 816,867 + SM_b21248 0.37 -0.8 817,055 + SM_b21248 0.53 -2.2 817,055 + SM_b21248 0.53 -1.3 817,056 - SM_b21248 0.53 -0.7 817,056 - SM_b21248 0.53 +0.0 817,068 - SM_b21248 0.54 -0.5 817,194 + SM_b21248 0.65 -1.9 817,194 + SM_b21248 0.65 -1.0 817,194 + SM_b21248 0.65 +1.9 817,194 + SM_b21248 0.65 +1.0 817,194 + SM_b21248 0.65 -0.7 817,195 - SM_b21248 0.65 -2.0 817,195 - SM_b21248 0.65 +1.3 817,213 + SM_b21248 0.66 +0.4 817,213 + SM_b21248 0.66 -0.2 817,216 + SM_b21248 0.67 -1.1 817,216 + SM_b21248 0.67 -1.1 817,298 + SM_b21248 0.74 -0.4 817,299 - SM_b21248 0.74 +0.5 817,299 - SM_b21248 0.74 -1.7 817,301 - SM_b21248 0.74 +0.1 817,301 - SM_b21248 0.74 -0.2 817,427 - SM_b21248 0.84 -1.4 817,610 + -1.7 817,744 + SM_b21249 0.12 +0.3 817,745 - SM_b21249 0.12 -0.6 817,831 - SM_b21249 0.22 -1.7 818,020 + SM_b21249 0.45 -0.9 818,021 - SM_b21249 0.45 +0.9 818,040 - SM_b21249 0.47 +0.3 818,059 - SM_b21249 0.49 -0.8 818,113 + SM_b21249 0.56 +0.7 818,114 - SM_b21249 0.56 -0.1 818,145 + SM_b21249 0.59 -1.8 818,145 + SM_b21249 0.59 -0.6 818,146 - SM_b21249 0.60 -0.4 818,287 - SM_b21249 0.76 +0.1 818,303 + SM_b21249 0.78 -0.9 818,304 - SM_b21249 0.78 +0.6 818,304 - SM_b21249 0.78 -1.7 818,314 - SM_b21249 0.79 -0.8 818,314 - SM_b21249 0.79 -0.6 818,314 - SM_b21249 0.79 -0.1 818,362 + SM_b21249 0.85 -0.6 818,363 - SM_b21249 0.85 -1.1 818,393 - SM_b21249 0.89 -0.5 818,432 + -0.9 818,440 - +0.5 818,534 + -1.1 818,576 - -0.2
Or see this region's nucleotide sequence