Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21245 and SM_b21246 are separated by 62 nucleotides SM_b21246 and SM_b21247 are separated by 40 nucleotides SM_b21247 and SM_b21248 are separated by 68 nucleotides
SM_b21245: SM_b21245 - OMA family outer membrane protein, at 813,621 to 814,871
_b21245
SM_b21246: SM_b21246 - UDP-phosphate galactose phosphotransferase, at 814,934 to 815,626
_b21246
SM_b21247: SM_b21247 - hypothetical protein, at 815,667 to 816,353
_b21247
SM_b21248: SM_b21248 - aminotransferase, at 816,422 to 817,612
_b21248
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.702 kb on + strand, within SM_b21245 at 814.703 kb on - strand, within SM_b21245 at 814.703 kb on - strand at 814.709 kb on + strand, within SM_b21245 at 814.709 kb on + strand, within SM_b21245 at 814.710 kb on - strand, within SM_b21245 at 814.756 kb on - strand at 814.761 kb on + strand at 814.761 kb on + strand at 814.761 kb on + strand at 814.762 kb on - strand at 814.762 kb on - strand at 814.762 kb on - strand at 814.804 kb on + strand at 814.804 kb on + strand at 814.869 kb on + strand at 814.869 kb on + strand at 814.869 kb on + strand at 814.870 kb on - strand at 814.870 kb on - strand at 814.904 kb on + strand at 814.904 kb on + strand at 814.905 kb on - strand at 814.928 kb on - strand at 814.928 kb on - strand at 814.945 kb on + strand at 814.945 kb on + strand at 814.995 kb on - strand at 815.149 kb on + strand, within SM_b21246 at 815.310 kb on + strand, within SM_b21246 at 815.310 kb on + strand, within SM_b21246 at 815.311 kb on - strand, within SM_b21246 at 815.311 kb on - strand, within SM_b21246 at 815.358 kb on + strand, within SM_b21246 at 815.409 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.473 kb on + strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.474 kb on - strand, within SM_b21246 at 815.683 kb on + strand at 815.684 kb on - strand at 815.897 kb on - strand, within SM_b21247 at 816.106 kb on - strand, within SM_b21247 at 816.141 kb on + strand, within SM_b21247 at 816.141 kb on + strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.142 kb on - strand, within SM_b21247 at 816.179 kb on + strand, within SM_b21247 at 816.351 kb on + strand at 816.352 kb on - strand at 816.386 kb on + strand at 816.387 kb on - strand at 816.387 kb on - strand at 816.401 kb on + strand at 816.440 kb on + strand at 816.536 kb on + strand at 816.536 kb on + strand at 816.536 kb on + strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.537 kb on - strand at 816.555 kb on + strand, within SM_b21248 at 816.754 kb on - strand, within SM_b21248 at 816.832 kb on - strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 816.867 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.055 kb on + strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.056 kb on - strand, within SM_b21248 at 817.068 kb on - strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.194 kb on + strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.195 kb on - strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.213 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.216 kb on + strand, within SM_b21248 at 817.298 kb on + strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.299 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248 at 817.301 kb on - strand, within SM_b21248
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 814,702 + SM_b21245 0.86 -0.4 814,703 - SM_b21245 0.86 +0.3 814,703 - +2.9 814,709 + SM_b21245 0.87 +0.8 814,709 + SM_b21245 0.87 -1.1 814,710 - SM_b21245 0.87 +0.8 814,756 - +0.2 814,761 + +1.2 814,761 + -0.8 814,761 + +0.3 814,762 - +2.6 814,762 - +0.2 814,762 - -1.7 814,804 + +0.4 814,804 + +0.0 814,869 + -1.2 814,869 + +0.3 814,869 + +0.3 814,870 - +0.4 814,870 - -0.8 814,904 + -1.5 814,904 + +0.7 814,905 - +0.3 814,928 - +0.6 814,928 - +2.4 814,945 + -1.6 814,945 + -0.1 814,995 - -0.2 815,149 + SM_b21246 0.31 +0.1 815,310 + SM_b21246 0.54 +0.3 815,310 + SM_b21246 0.54 +0.3 815,311 - SM_b21246 0.54 +0.4 815,311 - SM_b21246 0.54 -0.4 815,358 + SM_b21246 0.61 -1.2 815,409 + SM_b21246 0.69 +0.9 815,473 + SM_b21246 0.78 -1.7 815,473 + SM_b21246 0.78 -0.7 815,473 + SM_b21246 0.78 -1.0 815,474 - SM_b21246 0.78 +0.8 815,474 - SM_b21246 0.78 +1.1 815,474 - SM_b21246 0.78 -1.4 815,683 + -0.7 815,684 - -0.4 815,897 - SM_b21247 0.33 -0.9 816,106 - SM_b21247 0.64 -1.1 816,141 + SM_b21247 0.69 -0.2 816,141 + SM_b21247 0.69 -1.5 816,142 - SM_b21247 0.69 +1.2 816,142 - SM_b21247 0.69 -0.3 816,142 - SM_b21247 0.69 -1.7 816,142 - SM_b21247 0.69 -0.3 816,179 + SM_b21247 0.75 -1.3 816,351 + +0.1 816,352 - +0.0 816,386 + +0.2 816,387 - -0.8 816,387 - +0.7 816,401 + +0.7 816,440 + +1.8 816,536 + -0.5 816,536 + +1.0 816,536 + +0.3 816,537 - +1.0 816,537 - +0.4 816,537 - -0.4 816,537 - +1.9 816,537 - +0.8 816,555 + SM_b21248 0.11 -0.4 816,754 - SM_b21248 0.28 +0.6 816,832 - SM_b21248 0.34 -1.3 816,867 + SM_b21248 0.37 +0.6 816,867 + SM_b21248 0.37 -0.8 817,055 + SM_b21248 0.53 -2.2 817,055 + SM_b21248 0.53 -1.3 817,056 - SM_b21248 0.53 -0.7 817,056 - SM_b21248 0.53 +0.0 817,068 - SM_b21248 0.54 -0.5 817,194 + SM_b21248 0.65 -1.9 817,194 + SM_b21248 0.65 -1.0 817,194 + SM_b21248 0.65 +1.9 817,194 + SM_b21248 0.65 +1.0 817,194 + SM_b21248 0.65 -0.7 817,195 - SM_b21248 0.65 -2.0 817,195 - SM_b21248 0.65 +1.3 817,213 + SM_b21248 0.66 +0.4 817,213 + SM_b21248 0.66 -0.2 817,216 + SM_b21248 0.67 -1.1 817,216 + SM_b21248 0.67 -1.1 817,298 + SM_b21248 0.74 -0.4 817,299 - SM_b21248 0.74 +0.5 817,299 - SM_b21248 0.74 -1.7 817,301 - SM_b21248 0.74 +0.1 817,301 - SM_b21248 0.74 -0.2
Or see this region's nucleotide sequence