Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21166 and SM_b21167 are separated by 34 nucleotides SM_b21167 and SM_b21168 are separated by 176 nucleotides
SM_b21166: SM_b21166 - Imidazolonepropionase (EC 3.5.2.7) <small>(from data)</small>, at 912,194 to 913,609
_b21166
SM_b21167: SM_b21167 - reverse transcriptasematurase, at 913,644 to 915,005
_b21167
SM_b21168: SM_b21168 - integral membrane transporter protein, at 915,182 to 916,366
_b21168
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -1
0
1
2 at 912.645 kb on + strand, within SM_b21166 at 912.850 kb on - strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.998 kb on - strand, within SM_b21166 at 913.137 kb on + strand, within SM_b21166 at 913.138 kb on - strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166 at 913.441 kb on + strand, within SM_b21166 at 913.442 kb on - strand, within SM_b21166 at 913.478 kb on - strand at 913.478 kb on - strand at 913.517 kb on + strand at 914.503 kb on + strand, within SM_b21167 at 914.503 kb on + strand, within SM_b21167 at 914.503 kb on + strand, within SM_b21167 at 914.504 kb on + strand, within SM_b21167 at 914.504 kb on - strand, within SM_b21167 at 914.504 kb on - strand, within SM_b21167 at 914.711 kb on - strand, within SM_b21167 at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.165 kb on + strand at 915.166 kb on - strand at 915.349 kb on - strand, within SM_b21168 at 915.465 kb on - strand, within SM_b21168 at 915.597 kb on + strand, within SM_b21168 at 915.598 kb on - strand, within SM_b21168 at 915.705 kb on + strand, within SM_b21168 at 915.705 kb on + strand, within SM_b21168 at 915.736 kb on - strand, within SM_b21168
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 912,645 + SM_b21166 0.32 -0.8 912,850 - SM_b21166 0.46 +1.0 912,900 + SM_b21166 0.50 +0.9 912,900 + SM_b21166 0.50 +0.4 912,998 - SM_b21166 0.57 -0.2 913,137 + SM_b21166 0.67 +2.4 913,138 - SM_b21166 0.67 +0.9 913,195 + SM_b21166 0.71 +0.5 913,195 + SM_b21166 0.71 +2.2 913,441 + SM_b21166 0.88 -0.5 913,442 - SM_b21166 0.88 -0.8 913,478 - -0.3 913,478 - -1.7 913,517 + -0.3 914,503 + SM_b21167 0.63 +0.9 914,503 + SM_b21167 0.63 +1.9 914,503 + SM_b21167 0.63 -1.4 914,504 + SM_b21167 0.63 -0.5 914,504 - SM_b21167 0.63 -1.7 914,504 - SM_b21167 0.63 -1.1 914,711 - SM_b21167 0.78 -0.2 915,060 + +0.5 915,060 + -0.1 915,060 + +0.0 915,060 + +1.9 915,060 + -0.9 915,165 + -0.3 915,166 - -0.3 915,349 - SM_b21168 0.14 -0.1 915,465 - SM_b21168 0.24 -1.1 915,597 + SM_b21168 0.35 -0.2 915,598 - SM_b21168 0.35 +0.4 915,705 + SM_b21168 0.44 -0.3 915,705 + SM_b21168 0.44 +0.1 915,736 - SM_b21168 0.47 -0.0
Or see this region's nucleotide sequence