Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20950 and SM_b21673 are separated by 28 nucleotides SM_b21673 and SM_b20951 are separated by 113 nucleotides SM_b20951 and SM_b20952 are separated by 19 nucleotides SM_b20952 and SM_b20953 are separated by 90 nucleotides SM_b20953 and SM_b20954 are separated by 138 nucleotides
SM_b20950: SM_b20950 - transport protein, Wzx, at 1,177,910 to 1,179,394
_b20950
SM_b21673: SM_b21673 - hypothetical protein, at 1,179,423 to 1,179,659
_b21673
SM_b20951: SM_b20951 - hypothetical protein, at 1,179,773 to 1,180,348
_b20951
SM_b20952: SM_b20952 - hypothetical protein, at 1,180,368 to 1,180,625
_b20952
SM_b20953: SM_b20953 - hypothetical protein, at 1,180,716 to 1,181,099
_b20953
SM_b20954: SM_b20954 - succinyltransferase, at 1,181,238 to 1,182,350
_b20954
Position (kb) 1180
1181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1179.538 kb on - strand, within SM_b21673 at 1179.583 kb on + strand, within SM_b21673 at 1179.583 kb on + strand, within SM_b21673 at 1179.583 kb on + strand, within SM_b21673 at 1179.583 kb on + strand, within SM_b21673 at 1179.584 kb on - strand, within SM_b21673 at 1179.584 kb on - strand, within SM_b21673 at 1179.584 kb on - strand, within SM_b21673 at 1179.585 kb on + strand, within SM_b21673 at 1179.585 kb on + strand, within SM_b21673 at 1179.585 kb on + strand, within SM_b21673 at 1179.585 kb on + strand, within SM_b21673 at 1179.586 kb on - strand, within SM_b21673 at 1179.586 kb on - strand, within SM_b21673 at 1179.651 kb on + strand at 1179.651 kb on + strand at 1179.652 kb on - strand at 1179.674 kb on - strand at 1179.795 kb on + strand at 1179.795 kb on + strand at 1179.796 kb on - strand at 1179.947 kb on - strand, within SM_b20951 at 1179.947 kb on - strand, within SM_b20951 at 1179.949 kb on + strand, within SM_b20951 at 1179.950 kb on - strand, within SM_b20951 at 1179.979 kb on + strand, within SM_b20951 at 1180.127 kb on + strand, within SM_b20951 at 1180.235 kb on + strand, within SM_b20951 at 1180.236 kb on - strand, within SM_b20951 at 1180.236 kb on - strand, within SM_b20951 at 1180.236 kb on - strand, within SM_b20951 at 1180.376 kb on - strand at 1180.376 kb on - strand at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.638 kb on + strand at 1180.639 kb on - strand at 1180.670 kb on - strand at 1180.859 kb on - strand, within SM_b20953 at 1181.150 kb on + strand at 1181.228 kb on + strand at 1181.229 kb on - strand at 1181.237 kb on + strand at 1181.276 kb on + strand at 1181.276 kb on + strand at 1181.277 kb on - strand at 1181.277 kb on - strand at 1181.317 kb on - strand at 1181.349 kb on + strand at 1181.350 kb on - strand, within SM_b20954 at 1181.520 kb on - strand, within SM_b20954
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,179,538 - SM_b21673 0.49 -0.8 1,179,583 + SM_b21673 0.68 -1.3 1,179,583 + SM_b21673 0.68 -3.0 1,179,583 + SM_b21673 0.68 -2.2 1,179,583 + SM_b21673 0.68 -0.8 1,179,584 - SM_b21673 0.68 +1.1 1,179,584 - SM_b21673 0.68 -0.1 1,179,584 - SM_b21673 0.68 -2.6 1,179,585 + SM_b21673 0.68 +1.7 1,179,585 + SM_b21673 0.68 -1.9 1,179,585 + SM_b21673 0.68 +0.4 1,179,585 + SM_b21673 0.68 -1.0 1,179,586 - SM_b21673 0.69 -0.1 1,179,586 - SM_b21673 0.69 +0.1 1,179,651 + +0.9 1,179,651 + -0.2 1,179,652 - +2.0 1,179,674 - -1.8 1,179,795 + -0.5 1,179,795 + +1.2 1,179,796 - +0.6 1,179,947 - SM_b20951 0.30 -0.2 1,179,947 - SM_b20951 0.30 -2.7 1,179,949 + SM_b20951 0.31 -1.0 1,179,950 - SM_b20951 0.31 +1.0 1,179,979 + SM_b20951 0.36 -1.2 1,180,127 + SM_b20951 0.61 -2.1 1,180,235 + SM_b20951 0.80 +0.7 1,180,236 - SM_b20951 0.80 +0.2 1,180,236 - SM_b20951 0.80 -1.3 1,180,236 - SM_b20951 0.80 +0.6 1,180,376 - +1.0 1,180,376 - +0.4 1,180,436 + SM_b20952 0.26 -0.3 1,180,436 + SM_b20952 0.26 +0.3 1,180,436 + SM_b20952 0.26 +2.5 1,180,436 + SM_b20952 0.26 +0.0 1,180,436 + SM_b20952 0.26 -1.1 1,180,437 - SM_b20952 0.27 +0.6 1,180,437 - SM_b20952 0.27 +1.2 1,180,437 - SM_b20952 0.27 -0.5 1,180,437 - SM_b20952 0.27 +1.5 1,180,437 - SM_b20952 0.27 +0.1 1,180,437 - SM_b20952 0.27 -0.1 1,180,638 + +0.3 1,180,639 - +0.8 1,180,670 - -0.5 1,180,859 - SM_b20953 0.37 +0.2 1,181,150 + +2.8 1,181,228 + +0.1 1,181,229 - +0.3 1,181,237 + +4.3 1,181,276 + +0.4 1,181,276 + +0.0 1,181,277 - +0.8 1,181,277 - -1.9 1,181,317 - +5.8 1,181,349 + +2.1 1,181,350 - SM_b20954 0.10 +0.8 1,181,520 - SM_b20954 0.25 +1.0
Or see this region's nucleotide sequence