Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20675

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20674 and SM_b20675 are separated by 32 nucleotidesSM_b20675 and SM_b20676 are separated by 25 nucleotides SM_b20674: SM_b20674 - LacI family transcriptional regulator, at 1,476,114 to 1,477,133 _b20674 SM_b20675: SM_b20675 - hypothetical protein, at 1,477,166 to 1,477,741 _b20675 SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687 _b20676 Position (kb) 1477 1478Strain fitness (log2 ratio) -2 -1 0 1 2at 1476.232 kb on + strand, within SM_b20674at 1476.237 kb on + strand, within SM_b20674at 1476.238 kb on - strand, within SM_b20674at 1476.238 kb on - strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.289 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.612 kb on + strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.613 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.615 kb on - strand, within SM_b20674at 1476.646 kb on - strand, within SM_b20674at 1476.777 kb on + strand, within SM_b20674at 1477.079 kb on - strandat 1477.427 kb on + strand, within SM_b20675at 1477.428 kb on - strand, within SM_b20675at 1477.473 kb on + strand, within SM_b20675at 1477.536 kb on + strand, within SM_b20675at 1477.537 kb on - strand, within SM_b20675at 1477.537 kb on - strand, within SM_b20675at 1477.537 kb on - strand, within SM_b20675at 1477.537 kb on - strand, within SM_b20675at 1477.602 kb on + strand, within SM_b20675at 1477.602 kb on + strand, within SM_b20675at 1477.602 kb on + strand, within SM_b20675at 1477.603 kb on - strand, within SM_b20675at 1477.603 kb on - strand, within SM_b20675at 1477.632 kb on + strand, within SM_b20675at 1477.633 kb on - strand, within SM_b20675at 1477.658 kb on - strand, within SM_b20675at 1477.888 kb on + strand, within SM_b20676at 1477.888 kb on + strand, within SM_b20676at 1477.888 kb on + strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1477.889 kb on - strand, within SM_b20676at 1478.043 kb on + strand, within SM_b20676at 1478.044 kb on - strand, within SM_b20676at 1478.339 kb on + strand, within SM_b20676

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,476,232 + SM_b20674 0.12 -2.2
1,476,237 + SM_b20674 0.12 -0.4
1,476,238 - SM_b20674 0.12 -2.2
1,476,238 - SM_b20674 0.12 -0.5
1,476,289 + SM_b20674 0.17 -0.5
1,476,289 + SM_b20674 0.17 +2.0
1,476,289 + SM_b20674 0.17 -1.1
1,476,612 + SM_b20674 0.49 -0.2
1,476,612 + SM_b20674 0.49 +1.1
1,476,612 + SM_b20674 0.49 +0.3
1,476,612 + SM_b20674 0.49 -0.8
1,476,612 + SM_b20674 0.49 +0.3
1,476,613 - SM_b20674 0.49 -0.7
1,476,613 - SM_b20674 0.49 -2.0
1,476,613 - SM_b20674 0.49 +0.2
1,476,613 - SM_b20674 0.49 -0.6
1,476,613 - SM_b20674 0.49 -0.5
1,476,615 - SM_b20674 0.49 -0.0
1,476,615 - SM_b20674 0.49 -0.4
1,476,615 - SM_b20674 0.49 +0.7
1,476,615 - SM_b20674 0.49 -0.4
1,476,646 - SM_b20674 0.52 -2.2
1,476,777 + SM_b20674 0.65 +1.6
1,477,079 - -1.9
1,477,427 + SM_b20675 0.45 -0.4
1,477,428 - SM_b20675 0.45 -0.0
1,477,473 + SM_b20675 0.53 -1.4
1,477,536 + SM_b20675 0.64 -2.6
1,477,537 - SM_b20675 0.64 -0.0
1,477,537 - SM_b20675 0.64 +0.3
1,477,537 - SM_b20675 0.64 -0.6
1,477,537 - SM_b20675 0.64 -0.3
1,477,602 + SM_b20675 0.76 +1.0
1,477,602 + SM_b20675 0.76 +0.4
1,477,602 + SM_b20675 0.76 +0.2
1,477,603 - SM_b20675 0.76 -0.4
1,477,603 - SM_b20675 0.76 -1.1
1,477,632 + SM_b20675 0.81 -0.1
1,477,633 - SM_b20675 0.81 -0.3
1,477,658 - SM_b20675 0.85 -0.3
1,477,888 + SM_b20676 0.13 +0.0
1,477,888 + SM_b20676 0.13 -1.3
1,477,888 + SM_b20676 0.13 +0.2
1,477,889 - SM_b20676 0.13 +1.3
1,477,889 - SM_b20676 0.13 +0.2
1,477,889 - SM_b20676 0.13 -1.3
1,478,043 + SM_b20676 0.30 +1.7
1,478,044 - SM_b20676 0.30 -1.6
1,478,339 + SM_b20676 0.62 +0.0

Or see this region's nucleotide sequence