Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20525 and SM_b20527 are separated by 589 nucleotides SM_b20527 and SM_b20528 are separated by 79 nucleotides SM_b20528 and SM_b20529 overlap by 14 nucleotides
SM_b20525: SM_b20525 - transcriptional regulator, at 550,946 to 551,554
_b20525
SM_b20527: SM_b20527 - hypothetical protein, at 552,144 to 552,578
_b20527
SM_b20528: SM_b20528 - hypothetical protein, at 552,658 to 553,458
_b20528
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.206 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.394 kb on + strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.395 kb on - strand, within SM_b20525 at 551.404 kb on - strand, within SM_b20525 at 551.483 kb on + strand, within SM_b20525 at 551.494 kb on - strand at 551.544 kb on + strand at 551.544 kb on + strand at 551.545 kb on - strand at 551.601 kb on + strand at 551.682 kb on - strand at 551.711 kb on + strand at 551.711 kb on + strand at 551.899 kb on + strand at 551.900 kb on - strand at 552.092 kb on + strand at 552.093 kb on - strand at 552.209 kb on + strand, within SM_b20527 at 552.210 kb on - strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.353 kb on + strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.354 kb on - strand, within SM_b20527 at 552.406 kb on + strand, within SM_b20527 at 552.880 kb on - strand, within SM_b20528 at 552.880 kb on - strand, within SM_b20528 at 553.059 kb on - strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.160 kb on + strand, within SM_b20528 at 553.161 kb on - strand, within SM_b20528 at 553.288 kb on + strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.446 kb on + strand at 553.532 kb on + strand at 553.547 kb on + strand, within SM_b20529
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 551,206 + SM_b20525 0.43 -2.3 551,206 + SM_b20525 0.43 -0.3 551,206 + SM_b20525 0.43 +1.7 551,206 + SM_b20525 0.43 -1.3 551,394 + SM_b20525 0.74 +0.3 551,394 + SM_b20525 0.74 +0.2 551,394 + SM_b20525 0.74 +0.9 551,395 - SM_b20525 0.74 -1.2 551,395 - SM_b20525 0.74 +0.1 551,395 - SM_b20525 0.74 -0.9 551,404 - SM_b20525 0.75 -2.5 551,483 + SM_b20525 0.88 +0.9 551,494 - -0.1 551,544 + +2.0 551,544 + -0.2 551,545 - -0.3 551,601 + -0.8 551,682 - +0.0 551,711 + -0.0 551,711 + -0.7 551,899 + -0.6 551,900 - +0.8 552,092 + -0.7 552,093 - -0.0 552,209 + SM_b20527 0.15 +2.0 552,210 - SM_b20527 0.15 -0.5 552,353 + SM_b20527 0.48 -0.2 552,353 + SM_b20527 0.48 -0.5 552,353 + SM_b20527 0.48 -2.3 552,353 + SM_b20527 0.48 -1.4 552,354 - SM_b20527 0.48 -0.6 552,354 - SM_b20527 0.48 -2.1 552,406 + SM_b20527 0.60 -0.3 552,880 - SM_b20528 0.28 +0.4 552,880 - SM_b20528 0.28 +0.1 553,059 - SM_b20528 0.50 -0.2 553,121 + SM_b20528 0.58 -1.0 553,121 + SM_b20528 0.58 +1.0 553,127 + SM_b20528 0.59 +0.6 553,127 + SM_b20528 0.59 +0.7 553,135 + SM_b20528 0.60 -2.0 553,135 + SM_b20528 0.60 +2.4 553,160 + SM_b20528 0.63 +1.0 553,161 - SM_b20528 0.63 +0.6 553,288 + SM_b20528 0.79 +0.0 553,289 - SM_b20528 0.79 -1.1 553,289 - SM_b20528 0.79 +0.0 553,446 + -0.0 553,532 + -0.9 553,547 + SM_b20529 0.11 -0.1
Or see this region's nucleotide sequence