Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20375 and SM_b20376 are separated by 203 nucleotides SM_b20376 and SM_b20377 are separated by 43 nucleotides SM_b20377 and SM_b20378 are separated by 33 nucleotides
SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437
_b20375
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448
_b20377
SM_b20378: SM_b20378 - aldehyde dehydrogenase, at 388,482 to 389,945
_b20378
Position (kb) 388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 387.753 kb on + strand, within SM_b20376 at 387.755 kb on + strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.796 kb on - strand, within SM_b20376 at 387.866 kb on + strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.929 kb on + strand, within SM_b20376 at 387.930 kb on - strand, within SM_b20376 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.181 kb on - strand, within SM_b20377 at 388.564 kb on + strand at 388.565 kb on - strand at 388.693 kb on + strand, within SM_b20378 at 388.693 kb on + strand, within SM_b20378 at 388.694 kb on - strand, within SM_b20378 at 388.694 kb on - strand, within SM_b20378 at 388.965 kb on + strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 389.056 kb on + strand, within SM_b20378 at 389.057 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 387,753 + SM_b20376 0.29 -3.1 387,755 + SM_b20376 0.30 -0.1 387,756 - SM_b20376 0.30 +0.8 387,756 - SM_b20376 0.30 +0.1 387,795 + SM_b20376 0.40 +0.4 387,795 + SM_b20376 0.40 +0.3 387,796 - SM_b20376 0.41 -2.7 387,866 + SM_b20376 0.59 +0.0 387,867 - SM_b20376 0.59 +0.5 387,867 - SM_b20376 0.59 -0.3 387,929 + SM_b20376 0.76 +3.6 387,930 - SM_b20376 0.76 +1.9 388,180 + SM_b20377 0.30 -0.2 388,180 + SM_b20377 0.30 -0.3 388,180 + SM_b20377 0.30 +0.1 388,180 + SM_b20377 0.30 -0.7 388,180 + SM_b20377 0.30 -4.1 388,181 - SM_b20377 0.30 -1.6 388,564 + +0.7 388,565 - +0.0 388,693 + SM_b20378 0.14 -0.8 388,693 + SM_b20378 0.14 -1.6 388,694 - SM_b20378 0.14 -1.0 388,694 - SM_b20378 0.14 -2.0 388,965 + SM_b20378 0.33 +0.4 388,966 - SM_b20378 0.33 -0.4 388,966 - SM_b20378 0.33 -0.5 388,966 - SM_b20378 0.33 +0.3 388,966 - SM_b20378 0.33 -0.0 389,056 + SM_b20378 0.39 -0.4 389,057 - SM_b20378 0.39 -0.9 389,094 - SM_b20378 0.42 -1.9 389,094 - SM_b20378 0.42 -0.1
Or see this region's nucleotide sequence