Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20278 and SM_b20279 are separated by 1 nucleotides SM_b20279 and SM_b20280 are separated by 31 nucleotides SM_b20280 and SM_b20281 are separated by 81 nucleotides
SM_b20278: SM_b20278 - hypothetical protein, at 282,954 to 283,532
_b20278
SM_b20279: SM_b20279 - hypothetical protein, at 283,534 to 284,037
_b20279
SM_b20280: SM_b20280 - hypothetical protein, at 284,069 to 285,535
_b20280
SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687
_b20281
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.075 kb on + strand, within SM_b20278 at 283.075 kb on + strand, within SM_b20278 at 283.076 kb on - strand, within SM_b20278 at 283.180 kb on + strand, within SM_b20278 at 283.222 kb on + strand, within SM_b20278 at 283.322 kb on + strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.324 kb on + strand, within SM_b20278 at 283.324 kb on + strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.349 kb on + strand, within SM_b20278 at 283.350 kb on - strand, within SM_b20278 at 283.409 kb on + strand, within SM_b20278 at 283.468 kb on - strand, within SM_b20278 at 283.480 kb on + strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.618 kb on - strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.809 kb on - strand, within SM_b20279 at 284.143 kb on - strand at 284.166 kb on - strand at 284.280 kb on + strand, within SM_b20280 at 284.281 kb on - strand, within SM_b20280 at 284.406 kb on + strand, within SM_b20280 at 284.662 kb on - strand, within SM_b20280 at 285.196 kb on - strand, within SM_b20280 at 285.471 kb on + strand at 285.471 kb on + strand at 285.472 kb on - strand at 285.539 kb on - strand at 285.829 kb on - strand, within SM_b20281 at 285.829 kb on - strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.434 kb on + strand, within SM_b20281 at 286.435 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 283,075 + SM_b20278 0.21 -0.4 283,075 + SM_b20278 0.21 +0.9 283,076 - SM_b20278 0.21 -0.7 283,180 + SM_b20278 0.39 -1.1 283,222 + SM_b20278 0.46 +0.4 283,322 + SM_b20278 0.64 -0.3 283,323 - SM_b20278 0.64 -0.5 283,323 - SM_b20278 0.64 -0.7 283,323 - SM_b20278 0.64 +0.4 283,323 - SM_b20278 0.64 -1.6 283,324 + SM_b20278 0.64 +0.8 283,324 + SM_b20278 0.64 +1.1 283,325 - SM_b20278 0.64 -1.3 283,325 - SM_b20278 0.64 +1.2 283,325 - SM_b20278 0.64 -1.3 283,349 + SM_b20278 0.68 +0.3 283,350 - SM_b20278 0.68 -0.8 283,409 + SM_b20278 0.79 -0.1 283,468 - SM_b20278 0.89 -0.1 283,480 + -0.3 283,481 - +1.2 283,481 - -0.4 283,481 - +1.1 283,481 - -0.3 283,618 - SM_b20279 0.17 -0.3 283,808 + SM_b20279 0.54 +0.4 283,808 + SM_b20279 0.54 +0.7 283,808 + SM_b20279 0.54 -0.7 283,808 + SM_b20279 0.54 -1.0 283,808 + SM_b20279 0.54 -1.3 283,808 + SM_b20279 0.54 +0.5 283,809 - SM_b20279 0.55 -1.1 284,143 - -0.7 284,166 - -0.7 284,280 + SM_b20280 0.14 +0.4 284,281 - SM_b20280 0.14 -0.1 284,406 + SM_b20280 0.23 +1.5 284,662 - SM_b20280 0.40 -0.8 285,196 - SM_b20280 0.77 +0.8 285,471 + -0.1 285,471 + +0.2 285,472 - -2.6 285,539 - +1.3 285,829 - SM_b20281 0.20 -0.3 285,829 - SM_b20281 0.20 +3.0 286,020 + SM_b20281 0.38 +0.2 286,020 + SM_b20281 0.38 +0.5 286,020 + SM_b20281 0.38 -1.3 286,434 + SM_b20281 0.76 +2.0 286,435 - SM_b20281 0.76 -0.7 286,504 - SM_b20281 0.83 -2.5 286,504 - SM_b20281 0.83 -0.5 286,504 - SM_b20281 0.83 +2.6
Or see this region's nucleotide sequence