Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20255 and SM_b20256 are separated by 131 nucleotides SM_b20256 and SM_b20257 are separated by 182 nucleotides SM_b20257 and SM_b20258 are separated by 104 nucleotides SM_b20258 and SM_b20259 are separated by 120 nucleotides
SM_b20255: SM_b20255 - hypothetical protein, at 260,759 to 261,310
_b20255
SM_b20256: SM_b20256 - hypothetical protein, at 261,442 to 261,891
_b20256
SM_b20257: SM_b20257 - adenylate cyclase, at 262,074 to 263,132
_b20257
SM_b20258: SM_b20258 - transcriptional regulator, at 263,237 to 263,947
_b20258
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 261.355 kb on + strand at 261.674 kb on + strand, within SM_b20256 at 261.674 kb on + strand, within SM_b20256 at 261.736 kb on + strand, within SM_b20256 at 261.749 kb on + strand, within SM_b20256 at 261.964 kb on + strand at 261.965 kb on - strand at 262.062 kb on + strand at 262.063 kb on - strand at 262.063 kb on - strand at 262.600 kb on - strand, within SM_b20257 at 262.699 kb on + strand, within SM_b20257 at 262.700 kb on - strand, within SM_b20257 at 262.807 kb on + strand, within SM_b20257 at 262.807 kb on + strand, within SM_b20257 at 262.808 kb on - strand, within SM_b20257 at 263.114 kb on + strand at 263.306 kb on + strand at 263.306 kb on + strand at 263.534 kb on + strand, within SM_b20258 at 263.713 kb on - strand, within SM_b20258 at 263.713 kb on - strand, within SM_b20258 at 263.762 kb on + strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258 at 263.775 kb on - strand, within SM_b20258
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 261,355 + +1.4 261,674 + SM_b20256 0.52 +4.0 261,674 + SM_b20256 0.52 -0.2 261,736 + SM_b20256 0.65 +0.8 261,749 + SM_b20256 0.68 -0.1 261,964 + -0.5 261,965 - -1.1 262,062 + -0.8 262,063 - +3.4 262,063 - +1.6 262,600 - SM_b20257 0.50 -0.1 262,699 + SM_b20257 0.59 +1.4 262,700 - SM_b20257 0.59 +0.1 262,807 + SM_b20257 0.69 -1.5 262,807 + SM_b20257 0.69 +0.4 262,808 - SM_b20257 0.69 +1.6 263,114 + -2.5 263,306 + -1.0 263,306 + -1.0 263,534 + SM_b20258 0.42 -0.5 263,713 - SM_b20258 0.67 -2.1 263,713 - SM_b20258 0.67 -1.2 263,762 + SM_b20258 0.74 +0.9 263,775 - SM_b20258 0.76 +1.0 263,775 - SM_b20258 0.76 -0.3 263,775 - SM_b20258 0.76 +0.5
Or see this region's nucleotide sequence