Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20217 and SM_b20218 are separated by 170 nucleotides SM_b20218 and SM_b20219 overlap by 1 nucleotides SM_b20219 and SM_b22002 are separated by 91 nucleotides
SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043
_b20217
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
SM_b20219: SM_b20219 - response regulator protein, at 227,578 to 228,315
_b20219
SM_b22002: SM_b22002 - epoxide hydrolase, at 228,407 to 228,829
_b22002
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 225.259 kb on + strand at 225.259 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.278 kb on - strand at 225.419 kb on + strand at 225.419 kb on + strand at 225.435 kb on - strand at 225.545 kb on + strand, within SM_b20217 at 225.624 kb on + strand, within SM_b20217 at 225.694 kb on + strand, within SM_b20217 at 225.735 kb on + strand, within SM_b20217 at 225.736 kb on - strand, within SM_b20217 at 225.787 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 226.002 kb on + strand at 226.142 kb on - strand at 226.470 kb on - strand, within SM_b20218 at 226.470 kb on - strand, within SM_b20218 at 226.676 kb on + strand, within SM_b20218 at 226.885 kb on - strand, within SM_b20218 at 227.089 kb on - strand, within SM_b20218 at 227.135 kb on + strand, within SM_b20218 at 227.136 kb on - strand, within SM_b20218 at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.544 kb on - strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.552 kb on - strand at 227.643 kb on + strand at 227.643 kb on + strand at 227.644 kb on - strand at 227.644 kb on - strand at 227.645 kb on + strand at 227.645 kb on + strand at 227.646 kb on - strand at 227.839 kb on - strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.007 kb on - strand, within SM_b20219 at 228.009 kb on - strand, within SM_b20219 at 228.174 kb on + strand at 228.249 kb on - strand at 228.249 kb on - strand at 228.373 kb on + strand at 228.373 kb on + strand at 228.374 kb on - strand at 228.501 kb on + strand, within SM_b22002 at 228.504 kb on + strand at 228.552 kb on + strand, within SM_b22002 at 228.553 kb on - strand, within SM_b22002
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 225,259 + +2.0 225,259 + -3.2 225,277 + -2.1 225,277 + -0.4 225,277 + -0.1 225,277 + -0.7 225,277 + +0.1 225,278 - -3.1 225,419 + -0.3 225,419 + +1.1 225,435 - +0.4 225,545 + SM_b20217 0.25 +0.3 225,624 + SM_b20217 0.37 +1.3 225,694 + SM_b20217 0.47 -2.1 225,735 + SM_b20217 0.54 +3.0 225,736 - SM_b20217 0.54 +0.7 225,787 - SM_b20217 0.61 -0.9 225,796 - SM_b20217 0.63 -1.1 225,796 - SM_b20217 0.63 +0.2 226,002 + +0.2 226,142 - +0.2 226,470 - SM_b20218 0.19 +1.7 226,470 - SM_b20218 0.19 +1.0 226,676 + SM_b20218 0.34 -3.6 226,885 - SM_b20218 0.49 -0.3 227,089 - SM_b20218 0.64 -1.3 227,135 + SM_b20218 0.67 -1.6 227,136 - SM_b20218 0.68 -0.9 227,445 + +0.1 227,446 - +1.5 227,446 - -0.4 227,544 - +0.1 227,551 + +0.3 227,551 + -0.1 227,551 + -0.7 227,552 - +0.6 227,643 + -0.9 227,643 + -0.6 227,644 - +0.4 227,644 - +0.3 227,645 + +0.1 227,645 + -2.9 227,646 - -0.5 227,839 - SM_b20219 0.35 -2.1 228,006 + SM_b20219 0.58 -2.6 228,006 + SM_b20219 0.58 +0.4 228,007 - SM_b20219 0.58 +0.0 228,009 - SM_b20219 0.58 +0.1 228,174 + -1.1 228,249 - -0.6 228,249 - +0.5 228,373 + -0.7 228,373 + -0.5 228,374 - +0.5 228,501 + SM_b22002 0.22 +0.2 228,504 + +0.0 228,552 + SM_b22002 0.34 -0.3 228,553 - SM_b22002 0.35 +0.6
Or see this region's nucleotide sequence