Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20024 and SM_b20025 are separated by 249 nucleotides SM_b20025 and SM_b20026 are separated by 206 nucleotides SM_b20026 and SM_b20027 are separated by 12 nucleotides
SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897
_b20024
SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124
_b20025
SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792
_b20026
SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310
_b20027
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.365 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.872 kb on - strand at 36.023 kb on + strand at 36.063 kb on - strand at 36.405 kb on + strand, within SM_b20025 at 36.406 kb on - strand, within SM_b20025 at 36.492 kb on + strand, within SM_b20025 at 36.493 kb on - strand, within SM_b20025 at 36.693 kb on + strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.804 kb on + strand, within SM_b20025 at 36.906 kb on + strand, within SM_b20025 at 36.907 kb on - strand, within SM_b20025 at 36.907 kb on - strand, within SM_b20025 at 37.113 kb on + strand at 37.742 kb on + strand, within SM_b20026 at 37.742 kb on + strand, within SM_b20026 at 37.791 kb on - strand at 37.791 kb on - strand at 37.791 kb on - strand at 37.884 kb on + strand at 37.885 kb on - strand at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.006 kb on + strand, within SM_b20027 at 38.007 kb on - strand, within SM_b20027 at 38.007 kb on - strand, within SM_b20027 at 38.010 kb on - strand, within SM_b20027 at 38.010 kb on - strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.053 kb on + strand, within SM_b20027 at 38.054 kb on - strand, within SM_b20027
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 35,365 - SM_b20024 0.45 +0.6 35,576 - SM_b20024 0.67 -0.8 35,576 - SM_b20024 0.67 +1.0 35,578 - SM_b20024 0.67 -0.2 35,578 - SM_b20024 0.67 +0.2 35,578 - SM_b20024 0.67 +0.4 35,578 - SM_b20024 0.67 -1.6 35,578 - SM_b20024 0.67 -1.7 35,872 - -0.1 36,023 + -0.4 36,063 - -1.7 36,405 + SM_b20025 0.26 -0.1 36,406 - SM_b20025 0.26 +1.2 36,492 + SM_b20025 0.35 -0.4 36,493 - SM_b20025 0.35 -0.3 36,693 + SM_b20025 0.56 +0.2 36,694 - SM_b20025 0.56 +1.0 36,694 - SM_b20025 0.56 -1.2 36,804 + SM_b20025 0.67 -0.2 36,906 + SM_b20025 0.78 +2.0 36,907 - SM_b20025 0.78 -0.2 36,907 - SM_b20025 0.78 +0.9 37,113 + +0.7 37,742 + SM_b20026 0.89 -0.3 37,742 + SM_b20026 0.89 -1.3 37,791 - +0.4 37,791 - +0.3 37,791 - -1.3 37,884 + -0.5 37,885 - -0.8 38,006 + SM_b20027 0.13 +0.5 38,006 + SM_b20027 0.13 +0.5 38,006 + SM_b20027 0.13 +1.2 38,006 + SM_b20027 0.13 +0.6 38,007 - SM_b20027 0.13 -1.7 38,007 - SM_b20027 0.13 +0.2 38,010 - SM_b20027 0.14 +0.3 38,010 - SM_b20027 0.14 -2.8 38,053 + SM_b20027 0.16 +1.9 38,053 + SM_b20027 0.16 -0.5 38,053 + SM_b20027 0.16 -0.1 38,054 - SM_b20027 0.17 -0.2
Or see this region's nucleotide sequence