Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20008 and SM_b20009 overlap by 14 nucleotides SM_b20009 and SM_b20010 are separated by 94 nucleotides
SM_b20008: SM_b20008 - ATP-dependent DNA ligase, at 12,297 to 13,364
_b20008
SM_b20009: SM_b20009 - transcriptional regulator, at 13,351 to 14,280
_b20009
SM_b20010: SM_b20010 - hypothetical protein, at 14,375 to 15,442
_b20010
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.444 kb on + strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.445 kb on - strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.503 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.505 kb on + strand, within SM_b20008 at 12.931 kb on + strand, within SM_b20008 at 12.932 kb on - strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.933 kb on + strand, within SM_b20008 at 12.934 kb on - strand, within SM_b20008 at 13.088 kb on + strand, within SM_b20008 at 13.268 kb on + strand at 13.337 kb on + strand at 13.337 kb on + strand at 13.337 kb on + strand at 13.337 kb on + strand at 13.337 kb on + strand at 13.337 kb on + strand at 13.338 kb on - strand at 13.338 kb on - strand at 13.338 kb on - strand at 13.338 kb on - strand at 13.341 kb on + strand at 13.341 kb on + strand at 13.342 kb on - strand at 13.342 kb on - strand at 13.399 kb on - strand at 13.551 kb on + strand, within SM_b20009 at 13.551 kb on + strand, within SM_b20009 at 13.552 kb on - strand, within SM_b20009 at 13.561 kb on + strand, within SM_b20009 at 13.846 kb on + strand, within SM_b20009 at 13.847 kb on - strand, within SM_b20009 at 13.847 kb on - strand, within SM_b20009 at 13.973 kb on + strand, within SM_b20009 at 14.229 kb on + strand at 14.230 kb on - strand at 14.230 kb on - strand at 14.263 kb on + strand at 14.264 kb on - strand at 14.264 kb on - strand at 14.340 kb on + strand at 14.369 kb on - strand at 14.655 kb on - strand, within SM_b20010 at 14.676 kb on - strand, within SM_b20010 at 14.734 kb on + strand, within SM_b20010 at 14.735 kb on - strand, within SM_b20010
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 12,444 + SM_b20008 0.14 -0.5 12,445 - SM_b20008 0.14 +0.2 12,445 - SM_b20008 0.14 +1.4 12,503 + SM_b20008 0.19 -0.2 12,503 + SM_b20008 0.19 -0.2 12,505 + SM_b20008 0.19 +0.9 12,505 + SM_b20008 0.19 +1.1 12,931 + SM_b20008 0.59 +0.0 12,932 - SM_b20008 0.59 -2.0 12,933 + SM_b20008 0.60 -0.5 12,933 + SM_b20008 0.60 +0.0 12,934 - SM_b20008 0.60 -1.0 13,088 + SM_b20008 0.74 -0.3 13,268 + -0.4 13,337 + +0.3 13,337 + +0.2 13,337 + +0.0 13,337 + -1.6 13,337 + -2.4 13,337 + +0.2 13,338 - +0.4 13,338 - -1.5 13,338 - +0.6 13,338 - +0.6 13,341 + -0.0 13,341 + +0.3 13,342 - +0.6 13,342 - +1.0 13,399 - +0.7 13,551 + SM_b20009 0.22 +0.0 13,551 + SM_b20009 0.22 -1.0 13,552 - SM_b20009 0.22 -0.0 13,561 + SM_b20009 0.23 +0.4 13,846 + SM_b20009 0.53 -0.6 13,847 - SM_b20009 0.53 -0.9 13,847 - SM_b20009 0.53 -0.6 13,973 + SM_b20009 0.67 +0.8 14,229 + +0.9 14,230 - +0.1 14,230 - +0.5 14,263 + -1.0 14,264 - +0.9 14,264 - +1.8 14,340 + +0.3 14,369 - -0.6 14,655 - SM_b20010 0.26 -1.3 14,676 - SM_b20010 0.28 +0.3 14,734 + SM_b20010 0.34 -1.0 14,735 - SM_b20010 0.34 +0.5
Or see this region's nucleotide sequence