Experiment: L-Glutamine (C)(N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19890 and PFLU_RS19895 overlap by 4 nucleotides PFLU_RS19895 and PFLU_RS19900 overlap by 4 nucleotides PFLU_RS19900 and PFLU_RS19905 overlap by 26 nucleotides PFLU_RS19905 and PFLU_RS19910 overlap by 4 nucleotides
PFLU_RS19890: PFLU_RS19890 - type II secretion system secretin GspD, at 4,502,339 to 4,504,561
_RS19890
PFLU_RS19895: PFLU_RS19895 - general secretion pathway protein GspN, at 4,504,558 to 4,505,082
_RS19895
PFLU_RS19900: PFLU_RS19900 - general secretion pathway protein GspM, at 4,505,079 to 4,505,690
_RS19900
PFLU_RS19905: PFLU_RS19905 - general secretion pathway protein GspL, at 4,505,665 to 4,506,684
_RS19905
PFLU_RS19910: PFLU_RS19910 - hypothetical protein, at 4,506,681 to 4,507,406
_RS19910
Position (kb) 4505
4506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.552 kb on + strand at 4504.553 kb on - strand at 4505.117 kb on - strand at 4505.225 kb on - strand, within PFLU_RS19900 at 4505.501 kb on + strand, within PFLU_RS19900 at 4505.547 kb on + strand, within PFLU_RS19900 at 4505.547 kb on + strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.970 kb on - strand, within PFLU_RS19905 at 4506.365 kb on + strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.430 kb on - strand, within PFLU_RS19905 at 4506.484 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C)(N); with TAPS remove 4,504,182 + PFLU_RS19890 0.83 +0.5 4,504,182 + PFLU_RS19890 0.83 -2.0 4,504,182 + PFLU_RS19890 0.83 -0.5 4,504,182 + PFLU_RS19890 0.83 -1.6 4,504,182 + PFLU_RS19890 0.83 +0.1 4,504,182 + PFLU_RS19890 0.83 +0.1 4,504,182 + PFLU_RS19890 0.83 +1.9 4,504,183 - PFLU_RS19890 0.83 +0.7 4,504,183 - PFLU_RS19890 0.83 -0.6 4,504,183 - PFLU_RS19890 0.83 +0.8 4,504,552 + +1.5 4,504,553 - +1.9 4,505,117 - -0.5 4,505,225 - PFLU_RS19900 0.24 -1.1 4,505,501 + PFLU_RS19900 0.69 -0.1 4,505,547 + PFLU_RS19900 0.76 -0.5 4,505,547 + PFLU_RS19900 0.76 +0.1 4,505,548 - PFLU_RS19900 0.77 +1.6 4,505,548 - PFLU_RS19900 0.77 +0.8 4,505,548 - PFLU_RS19900 0.77 +0.3 4,505,970 - PFLU_RS19905 0.30 -0.1 4,506,365 + PFLU_RS19905 0.69 -0.1 4,506,366 - PFLU_RS19905 0.69 +2.7 4,506,366 - PFLU_RS19905 0.69 -0.9 4,506,366 - PFLU_RS19905 0.69 +0.3 4,506,366 - PFLU_RS19905 0.69 +0.3 4,506,430 - PFLU_RS19905 0.75 +0.2 4,506,484 + PFLU_RS19905 0.80 -2.3 4,506,548 + PFLU_RS19905 0.87 -0.6 4,506,548 + PFLU_RS19905 0.87 +0.2 4,506,548 + PFLU_RS19905 0.87 +0.4 4,506,548 + PFLU_RS19905 0.87 -0.8 4,506,549 - PFLU_RS19905 0.87 -0.5 4,506,549 - PFLU_RS19905 0.87 -0.2 4,506,549 - PFLU_RS19905 0.87 +0.9 4,506,549 - PFLU_RS19905 0.87 -0.1 4,506,549 - PFLU_RS19905 0.87 -0.4 4,506,549 - PFLU_RS19905 0.87 +1.3 4,506,549 - PFLU_RS19905 0.87 -0.5 4,506,549 - PFLU_RS19905 0.87 +0.1 4,506,678 + -0.5 4,506,678 + -0.9 4,506,678 + +0.5 4,506,678 + -0.8 4,506,679 - -0.5 4,506,679 - -0.3 4,506,679 - +1.0 4,506,679 - -1.2 4,506,679 - +0.5 4,506,679 - -0.0
Or see this region's nucleotide sequence