Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00815 and HSERO_RS00820 are separated by 150 nucleotides HSERO_RS00820 and HSERO_RS00825 are separated by 92 nucleotides HSERO_RS00825 and HSERO_RS00830 are separated by 3 nucleotides
HSERO_RS00815: HSERO_RS00815 - sulfurtransferase, at 169,055 to 169,468
_RS00815
HSERO_RS00820: HSERO_RS00820 - phosphoglyceromutase, at 169,619 to 170,365
_RS00820
HSERO_RS00825: HSERO_RS00825 - protease, at 170,458 to 171,870
_RS00825
HSERO_RS00830: HSERO_RS00830 - peptidase S41, at 171,874 to 173,370
_RS00830
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 169.535 kb on - strand at 169.535 kb on - strand at 169.537 kb on + strand at 169.537 kb on + strand at 169.545 kb on - strand at 170.374 kb on + strand at 170.382 kb on - strand at 170.529 kb on - strand at 170.646 kb on - strand, within HSERO_RS00825 at 170.656 kb on - strand, within HSERO_RS00825 at 170.763 kb on - strand, within HSERO_RS00825 at 170.795 kb on - strand, within HSERO_RS00825 at 170.795 kb on - strand, within HSERO_RS00825 at 170.850 kb on + strand, within HSERO_RS00825 at 170.905 kb on + strand, within HSERO_RS00825 at 171.298 kb on - strand, within HSERO_RS00825 at 171.310 kb on + strand, within HSERO_RS00825 at 171.369 kb on - strand, within HSERO_RS00825 at 171.596 kb on + strand, within HSERO_RS00825 at 171.644 kb on + strand, within HSERO_RS00825 at 171.721 kb on + strand, within HSERO_RS00825 at 171.721 kb on + strand, within HSERO_RS00825 at 171.729 kb on - strand at 171.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 169,535 - +0.3 169,535 - +0.2 169,537 + +0.2 169,537 + +0.5 169,545 - -2.2 170,374 + +1.8 170,382 - -0.3 170,529 - +0.6 170,646 - HSERO_RS00825 0.13 +4.5 170,656 - HSERO_RS00825 0.14 -0.2 170,763 - HSERO_RS00825 0.22 +1.2 170,795 - HSERO_RS00825 0.24 +1.3 170,795 - HSERO_RS00825 0.24 +0.3 170,850 + HSERO_RS00825 0.28 -0.1 170,905 + HSERO_RS00825 0.32 -1.7 171,298 - HSERO_RS00825 0.59 -0.3 171,310 + HSERO_RS00825 0.60 -0.4 171,369 - HSERO_RS00825 0.64 +0.3 171,596 + HSERO_RS00825 0.81 +0.4 171,644 + HSERO_RS00825 0.84 -1.2 171,721 + HSERO_RS00825 0.89 +1.7 171,721 + HSERO_RS00825 0.89 +1.0 171,729 - -2.8 171,744 + -0.9
Or see this region's nucleotide sequence