Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02154 and SMc04429 overlap by 4 nucleotides SMc04429 and SMc02153 are separated by 1 nucleotides
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357
SMc04429
SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690
SMc02153
Position (kb) 554
555
556 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 553.770 kb on + strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.886 kb on + strand, within SMc02154 at 553.887 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.942 kb on + strand, within SMc02154 at 553.943 kb on - strand, within SMc02154 at 554.040 kb on + strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.043 kb on + strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.208 kb on + strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.425 kb on + strand at 554.696 kb on + strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.768 kb on + strand at 554.768 kb on + strand at 554.769 kb on - strand at 555.028 kb on + strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.131 kb on - strand, within SMc04429 at 555.156 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.173 kb on - strand, within SMc04429 at 555.210 kb on - strand, within SMc04429 at 555.724 kb on + strand, within SMc02153 at 555.724 kb on + strand, within SMc02153 at 555.725 kb on - strand, within SMc02153 at 555.762 kb on - strand, within SMc02153 at 555.801 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 556.046 kb on + strand, within SMc02153 at 556.176 kb on + strand, within SMc02153 at 556.221 kb on + strand, within SMc02153 at 556.264 kb on - strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.267 kb on - strand, within SMc02153 at 556.291 kb on + strand, within SMc02153 at 556.291 kb on + strand, within SMc02153
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 553,770 + SMc02154 0.67 +0.7 553,771 - SMc02154 0.67 -0.2 553,771 - SMc02154 0.67 +0.8 553,800 + SMc02154 0.68 +0.5 553,800 + SMc02154 0.68 +0.2 553,801 - SMc02154 0.69 -1.0 553,801 - SMc02154 0.69 +0.1 553,801 - SMc02154 0.69 -1.0 553,886 + SMc02154 0.71 +0.6 553,887 - SMc02154 0.71 +1.2 553,892 - SMc02154 0.72 +0.8 553,892 - SMc02154 0.72 +1.8 553,919 - SMc02154 0.73 +0.6 553,919 - SMc02154 0.73 -0.6 553,942 + SMc02154 0.73 -1.6 553,943 - SMc02154 0.73 +0.7 554,040 + SMc02154 0.77 -0.4 554,041 - SMc02154 0.77 -1.0 554,041 - SMc02154 0.77 +1.4 554,043 + SMc02154 0.77 -0.1 554,044 - SMc02154 0.77 -1.7 554,044 - SMc02154 0.77 -2.5 554,208 + SMc02154 0.83 +1.7 554,209 - SMc02154 0.83 +1.4 554,209 - SMc02154 0.83 -0.9 554,209 - SMc02154 0.83 +0.5 554,425 + -0.8 554,696 + +0.8 554,697 - -0.0 554,697 - -0.2 554,697 - -0.1 554,697 - +0.9 554,768 + +0.8 554,768 + -0.1 554,769 - -0.6 555,028 + SMc04429 0.49 +0.6 555,029 - SMc04429 0.49 +2.0 555,029 - SMc04429 0.49 +0.2 555,084 + SMc04429 0.58 +0.6 555,084 + SMc04429 0.58 +0.3 555,085 - SMc04429 0.58 -1.5 555,085 - SMc04429 0.58 -2.6 555,131 - SMc04429 0.65 +0.6 555,156 + SMc04429 0.69 +0.3 555,172 + SMc04429 0.71 +0.8 555,172 + SMc04429 0.71 -0.2 555,172 + SMc04429 0.71 -0.4 555,172 + SMc04429 0.71 -2.5 555,172 + SMc04429 0.71 -0.1 555,172 + SMc04429 0.71 +2.2 555,173 - SMc04429 0.71 -4.7 555,210 - SMc04429 0.77 +0.9 555,724 + SMc02153 0.27 -0.2 555,724 + SMc02153 0.27 +1.2 555,725 - SMc02153 0.27 +0.2 555,762 - SMc02153 0.30 +0.1 555,801 - SMc02153 0.33 +0.2 555,942 - SMc02153 0.44 +2.2 555,942 - SMc02153 0.44 +0.6 555,942 - SMc02153 0.44 +4.0 556,046 + SMc02153 0.52 +0.2 556,176 + SMc02153 0.61 +1.3 556,221 + SMc02153 0.65 +0.1 556,264 - SMc02153 0.68 -0.2 556,266 + SMc02153 0.68 +1.3 556,266 + SMc02153 0.68 -0.9 556,267 - SMc02153 0.68 -0.8 556,291 + SMc02153 0.70 +0.4 556,291 + SMc02153 0.70 +0.5
Or see this region's nucleotide sequence