Strain Fitness in Sinorhizobium meliloti 1021 around SMc04277

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04275 and SMc04277 are separated by 2 nucleotidesSMc04277 and SMc04278 are separated by 171 nucleotidesSMc04278 and SMc04279 are separated by 150 nucleotides SMc04275: SMc04275 - 3-oxoacyl-ACP synthase, at 2,099,909 to 2,101,111 SMc04275 SMc04277: SMc04277 - (3R)-hydroxymyristoyl-ACP dehydratase, at 2,101,114 to 2,101,590 SMc04277 SMc04278: SMc04278 - acyl carrier protein, at 2,101,762 to 2,102,049 SMc04278 SMc04279: SMc04279 - cobalamin biosynthesis protein, at 2,102,200 to 2,103,183 SMc04279 Position (kb) 2101 2102Strain fitness (log2 ratio) -1 0 1at 2102.165 kb on + strandat 2102.165 kb on + strandat 2102.201 kb on + strandat 2102.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,102,165 + -0.5
2,102,165 + -0.7
2,102,201 + -0.1
2,102,202 - -0.7

Or see this region's nucleotide sequence