Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04118 and SMc04117 are separated by 7 nucleotides SMc04117 and SMc04116 are separated by 225 nucleotides SMc04116 and SMc04115 are separated by 164 nucleotides SMc04115 and SMc04114 are separated by 251 nucleotides
SMc04118: SMc04118 - hypothetical protein, at 157,283 to 157,867
SMc04118
SMc04117: SMc04117 - hypothetical protein, at 157,875 to 158,489
SMc04117
SMc04116: SMc04116 - transposase, at 158,715 to 159,878
SMc04116
SMc04115: SMc04115 - hypothetical protein, at 160,043 to 160,459
SMc04115
SMc04114: SMc04114 - pilin subunit protein, at 160,711 to 160,893
SMc04114
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.746 kb on + strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.879 kb on + strand at 157.880 kb on - strand at 157.918 kb on + strand at 157.919 kb on - strand at 157.999 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.010 kb on + strand, within SMc04117 at 158.020 kb on + strand, within SMc04117 at 158.291 kb on + strand, within SMc04117 at 158.527 kb on + strand at 158.574 kb on - strand at 158.574 kb on - strand at 158.651 kb on + strand at 158.673 kb on - strand at 160.044 kb on + strand at 160.044 kb on + strand at 160.044 kb on + strand at 160.350 kb on + strand, within SMc04115 at 160.351 kb on - strand, within SMc04115 at 160.351 kb on - strand, within SMc04115 at 160.477 kb on + strand at 160.478 kb on - strand at 160.635 kb on - strand at 160.706 kb on + strand at 160.707 kb on - strand at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.836 kb on + strand, within SMc04114 at 160.837 kb on - strand, within SMc04114 at 160.837 kb on - strand, within SMc04114 at 160.837 kb on - strand, within SMc04114
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 157,746 + SMc04118 0.79 -0.6 157,747 - SMc04118 0.79 -0.4 157,747 - SMc04118 0.79 -2.2 157,747 - SMc04118 0.79 +0.2 157,879 + -0.3 157,880 - -0.7 157,918 + -1.1 157,919 - -0.7 157,999 + SMc04117 0.20 +0.4 158,002 + SMc04117 0.21 +0.9 158,002 + SMc04117 0.21 +1.1 158,002 + SMc04117 0.21 -0.1 158,002 + SMc04117 0.21 +0.2 158,010 + SMc04117 0.22 -0.3 158,020 + SMc04117 0.24 +0.1 158,291 + SMc04117 0.68 -1.0 158,527 + -0.5 158,574 - +0.9 158,574 - -0.7 158,651 + +0.6 158,673 - +1.9 160,044 + -0.6 160,044 + -0.2 160,044 + +0.0 160,350 + SMc04115 0.74 -0.4 160,351 - SMc04115 0.74 +0.6 160,351 - SMc04115 0.74 -0.9 160,477 + -1.1 160,478 - -0.4 160,635 - +1.0 160,706 + +2.3 160,707 - +0.6 160,836 + SMc04114 0.68 -0.4 160,836 + SMc04114 0.68 +0.7 160,836 + SMc04114 0.68 -1.3 160,836 + SMc04114 0.68 +0.3 160,837 - SMc04114 0.69 +0.9 160,837 - SMc04114 0.69 +0.4 160,837 - SMc04114 0.69 +0.3
Or see this region's nucleotide sequence