Strain Fitness in Sinorhizobium meliloti 1021 around SMc04041

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc04040 and SMc04041 are separated by 374 nucleotidesSMc04041 and SMc04042 overlap by 4 nucleotides SMc04040: SMc04040 - heat shock protein, at 3,043,936 to 3,044,397 SMc04040 SMc04041: SMc04041 - lysophospholipase L2 protein, at 3,044,772 to 3,045,755 SMc04041 SMc04042: SMc04042 - monophosphatase, at 3,045,752 to 3,046,531 SMc04042 Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3044.123 kb on - strand, within SMc04040at 3044.294 kb on + strand, within SMc04040at 3045.075 kb on + strand, within SMc04041at 3045.753 kb on + strandat 3045.754 kb on - strandat 3045.906 kb on + strand, within SMc04042at 3045.906 kb on + strand, within SMc04042at 3045.970 kb on - strand, within SMc04042at 3045.970 kb on - strand, within SMc04042at 3046.134 kb on + strand, within SMc04042at 3046.319 kb on - strand, within SMc04042at 3046.516 kb on + strandat 3046.566 kb on + strandat 3046.567 kb on - strandat 3046.567 kb on - strandat 3046.652 kb on - strandat 3046.652 kb on - strandat 3046.731 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
3,044,123 - SMc04040 0.40 +0.7
3,044,294 + SMc04040 0.77 +0.6
3,045,075 + SMc04041 0.31 +2.1
3,045,753 + -1.8
3,045,754 - -0.6
3,045,906 + SMc04042 0.20 +0.4
3,045,906 + SMc04042 0.20 -0.9
3,045,970 - SMc04042 0.28 -1.9
3,045,970 - SMc04042 0.28 -1.2
3,046,134 + SMc04042 0.49 -3.0
3,046,319 - SMc04042 0.73 -0.2
3,046,516 + +1.3
3,046,566 + -0.1
3,046,567 - +0.1
3,046,567 - -0.5
3,046,652 - -0.3
3,046,652 - -0.7
3,046,731 + -4.1

Or see this region's nucleotide sequence