Strain Fitness in Sinorhizobium meliloti 1021 around SMc03854

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03852 and SMc03853 overlap by 4 nucleotidesSMc03853 and SMc03854 are separated by 97 nucleotidesSMc03854 and SMc03855 are separated by 14 nucleotides SMc03852: SMc03852 - hypothetical protein, at 3,516,909 to 3,517,502 SMc03852 SMc03853: SMc03853 - intracellular septation protein A, at 3,517,499 to 3,518,131 SMc03853 SMc03854: SMc03854 - cell division protein, at 3,518,229 to 3,519,875 SMc03854 SMc03855: SMc03855 - hypothetical protein, at 3,519,890 to 3,521,164 SMc03855 Position (kb) 3518 3519 3520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3517.267 kb on + strand, within SMc03852at 3517.303 kb on + strand, within SMc03852at 3517.304 kb on - strand, within SMc03852at 3517.328 kb on + strand, within SMc03852at 3517.329 kb on - strand, within SMc03852at 3517.366 kb on + strand, within SMc03852at 3517.387 kb on - strand, within SMc03852at 3518.191 kb on + strandat 3518.191 kb on + strandat 3520.293 kb on - strand, within SMc03855at 3520.482 kb on - strand, within SMc03855at 3520.579 kb on - strand, within SMc03855

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,517,267 + SMc03852 0.60 +2.2
3,517,303 + SMc03852 0.66 -0.4
3,517,304 - SMc03852 0.66 +0.3
3,517,328 + SMc03852 0.71 -0.4
3,517,329 - SMc03852 0.71 +1.7
3,517,366 + SMc03852 0.77 -0.6
3,517,387 - SMc03852 0.80 +0.3
3,518,191 + -2.8
3,518,191 + +0.6
3,520,293 - SMc03855 0.32 +1.7
3,520,482 - SMc03855 0.46 -0.3
3,520,579 - SMc03855 0.54 +1.0

Or see this region's nucleotide sequence