Strain Fitness in Sinorhizobium meliloti 1021 around SMc03192

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03190 and SMc03191 overlap by 4 nucleotidesSMc03191 and SMc03192 overlap by 4 nucleotidesSMc03192 and SMc03193 are separated by 2 nucleotides SMc03190: SMc03190 - precorrin-3B C(17)-methyltransferase, at 3,154,469 to 3,155,233 SMc03190 SMc03191: SMc03191 - precorrin-2 C(20)-methyltransferase, at 3,155,230 to 3,155,985 SMc03191 SMc03192: SMc03192 - precorrin-8X methylmutase, at 3,155,982 to 3,156,614 SMc03192 SMc03193: SMc03193 - cobalamin biosynthesis protein, at 3,156,617 to 3,157,984 SMc03193 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -1 0 1at 3156.599 kb on - strandat 3156.665 kb on - strandat 3156.741 kb on - strandat 3156.792 kb on - strand, within SMc03193

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,156,599 - +1.7
3,156,665 - -1.7
3,156,741 - +1.3
3,156,792 - SMc03193 0.13 -1.7

Or see this region's nucleotide sequence