Strain Fitness in Sinorhizobium meliloti 1021 around SMc03187

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03186 and SMc03187 are separated by 44 nucleotidesSMc03187 and SMc03188 are separated by 38 nucleotides SMc03186: SMc03186 - transcriptional regulator, at 3,150,721 to 3,151,653 SMc03186 SMc03187: SMc03187 - precorrin-4 C(11)-methyltransferase, at 3,151,698 to 3,152,456 SMc03187 SMc03188: SMc03188 - precorrin-6Y C5,15-methyltransferase (decarboxylating) protein, at 3,152,495 to 3,153,736 SMc03188 Position (kb) 3151 3152 3153Strain fitness (log2 ratio) -3 -2 -1 0 1at 3150.719 kb on + strandat 3150.831 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3150.926 kb on - strand, within SMc03186at 3151.361 kb on - strand, within SMc03186at 3152.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,150,719 + -0.7
3,150,831 - SMc03186 0.12 -2.3
3,150,926 - SMc03186 0.22 -0.0
3,150,926 - SMc03186 0.22 -2.9
3,150,926 - SMc03186 0.22 +1.3
3,151,361 - SMc03186 0.69 +0.4
3,152,505 - -1.1

Or see this region's nucleotide sequence