Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02793 and SMc02792 are separated by 47 nucleotides SMc02792 and SMc02791 overlap by 8 nucleotides SMc02791 and SMc02790 overlap by 4 nucleotides
SMc02793: SMc02793 - hypothetical protein, at 478 to 1,299
SMc02793
SMc02792: SMc02792 - Maf-like protein, at 1,347 to 1,946
SMc02792
SMc02791: SMc02791 - shikimate 5-dehydrogenase, at 1,939 to 2,799
SMc02791
SMc02790: SMc02790 - dephospho-CoA kinase, at 2,796 to 3,380
SMc02790
Position (kb) 1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 0.454 kb on + strand at 0.496 kb on + strand at 0.671 kb on + strand, within SMc02793 at 0.676 kb on + strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.677 kb on - strand, within SMc02793 at 0.970 kb on + strand, within SMc02793 at 0.988 kb on - strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.004 kb on + strand, within SMc02793 at 1.074 kb on + strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.154 kb on - strand, within SMc02793 at 1.156 kb on - strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.185 kb on + strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.186 kb on - strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.189 kb on + strand, within SMc02793 at 1.293 kb on + strand at 1.293 kb on + strand at 1.293 kb on + strand at 1.294 kb on - strand at 1.821 kb on + strand, within SMc02792
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 454 + -2.1 496 + +2.3 671 + SMc02793 0.23 +0.8 676 + SMc02793 0.24 -0.4 677 - SMc02793 0.24 -3.7 677 - SMc02793 0.24 -1.7 677 - SMc02793 0.24 -2.2 677 - SMc02793 0.24 +0.3 970 + SMc02793 0.60 -0.5 988 - SMc02793 0.62 -1.6 1,004 + SMc02793 0.64 -1.4 1,004 + SMc02793 0.64 -1.0 1,004 + SMc02793 0.64 -1.5 1,074 + SMc02793 0.73 -0.6 1,154 - SMc02793 0.82 -0.9 1,154 - SMc02793 0.82 +2.8 1,156 - SMc02793 0.82 -0.9 1,185 + SMc02793 0.86 -1.1 1,185 + SMc02793 0.86 -2.8 1,186 - SMc02793 0.86 +1.4 1,186 - SMc02793 0.86 +1.3 1,189 + SMc02793 0.86 -1.4 1,189 + SMc02793 0.86 -3.8 1,293 + -3.4 1,293 + -1.6 1,293 + -2.3 1,294 - +0.9 1,821 + SMc02792 0.79 +5.1
Or see this region's nucleotide sequence