Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02770 and SMc02769 are separated by 149 nucleotides SMc02769 and SMc02768 are separated by 98 nucleotides SMc02768 and SMc02767 are separated by 237 nucleotides SMc02767 and SMc02766 are separated by 24 nucleotides
SMc02770: SMc02770 - hypothetical protein, at 24,435 to 25,709
SMc02770
SMc02769: SMc02769 - hypothetical protein, at 25,859 to 26,284
SMc02769
SMc02768: SMc02768 - hypothetical protein, at 26,383 to 27,138
SMc02768
SMc02767: SMc02767 - N-(5'-phosphoribosyl)anthranilate isomerase, at 27,376 to 28,023
SMc02767
SMc02766: SMc02766 - tryptophan synthase subunit beta, at 28,048 to 29,268
SMc02766
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.547 kb on + strand, within SMc02770 at 25.547 kb on + strand, within SMc02770 at 25.548 kb on - strand, within SMc02770 at 25.560 kb on + strand, within SMc02770 at 25.560 kb on + strand, within SMc02770 at 25.560 kb on + strand, within SMc02770 at 25.560 kb on + strand, within SMc02770 at 25.561 kb on - strand, within SMc02770 at 25.770 kb on + strand at 25.771 kb on - strand at 25.771 kb on - strand at 25.950 kb on + strand, within SMc02769 at 25.951 kb on - strand, within SMc02769 at 25.951 kb on - strand, within SMc02769 at 25.965 kb on - strand, within SMc02769 at 26.077 kb on + strand, within SMc02769 at 26.078 kb on - strand, within SMc02769 at 26.177 kb on + strand, within SMc02769 at 26.178 kb on - strand, within SMc02769 at 26.178 kb on - strand, within SMc02769 at 26.181 kb on + strand, within SMc02769 at 26.182 kb on - strand, within SMc02769 at 26.182 kb on - strand, within SMc02769 at 26.182 kb on - strand, within SMc02769 at 26.182 kb on - strand, within SMc02769 at 26.182 kb on - strand, within SMc02769 at 26.336 kb on + strand at 26.852 kb on - strand, within SMc02768 at 27.455 kb on + strand, within SMc02767 at 27.456 kb on - strand, within SMc02767 at 27.670 kb on + strand, within SMc02767 at 27.671 kb on - strand, within SMc02767 at 27.736 kb on + strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.859 kb on + strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.933 kb on + strand, within SMc02767 at 27.933 kb on + strand, within SMc02767 at 27.934 kb on - strand, within SMc02767 at 28.062 kb on + strand at 28.112 kb on + strand at 28.113 kb on - strand at 28.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 25,547 + SMc02770 0.87 +1.3 25,547 + SMc02770 0.87 -0.7 25,548 - SMc02770 0.87 +0.9 25,560 + SMc02770 0.88 +0.8 25,560 + SMc02770 0.88 +1.8 25,560 + SMc02770 0.88 +2.3 25,560 + SMc02770 0.88 +0.9 25,561 - SMc02770 0.88 -1.8 25,770 + +0.5 25,771 - +0.8 25,771 - -0.2 25,950 + SMc02769 0.21 +0.6 25,951 - SMc02769 0.22 +0.5 25,951 - SMc02769 0.22 +0.9 25,965 - SMc02769 0.25 +0.6 26,077 + SMc02769 0.51 -0.4 26,078 - SMc02769 0.51 -1.7 26,177 + SMc02769 0.75 -1.3 26,178 - SMc02769 0.75 +0.0 26,178 - SMc02769 0.75 +1.3 26,181 + SMc02769 0.76 -0.5 26,182 - SMc02769 0.76 -2.0 26,182 - SMc02769 0.76 -1.1 26,182 - SMc02769 0.76 +0.9 26,182 - SMc02769 0.76 +0.6 26,182 - SMc02769 0.76 -0.1 26,336 + -2.1 26,852 - SMc02768 0.62 -1.4 27,455 + SMc02767 0.12 -0.2 27,456 - SMc02767 0.12 +1.3 27,670 + SMc02767 0.45 -0.9 27,671 - SMc02767 0.46 -2.3 27,736 + SMc02767 0.56 +1.9 27,737 - SMc02767 0.56 -0.4 27,737 - SMc02767 0.56 +0.1 27,737 - SMc02767 0.56 +0.3 27,859 + SMc02767 0.75 -0.9 27,860 - SMc02767 0.75 +0.2 27,860 - SMc02767 0.75 -1.9 27,860 - SMc02767 0.75 -0.4 27,860 - SMc02767 0.75 +0.7 27,933 + SMc02767 0.86 +0.8 27,933 + SMc02767 0.86 +0.5 27,934 - SMc02767 0.86 +2.1 28,062 + -0.4 28,112 + -0.3 28,113 - -0.6 28,113 - -0.7
Or see this region's nucleotide sequence